View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5491_low_9 (Length: 259)

Name: NF5491_low_9
Description: NF5491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5491_low_9
NF5491_low_9
[»] chr6 (5 HSPs)
chr6 (11-259)||(26599586-26599834)
chr6 (53-134)||(34882342-34882423)
chr6 (53-94)||(33887897-33887938)
chr6 (53-101)||(33630451-33630499)
chr6 (53-101)||(34430783-34430831)
[»] chr4 (6 HSPs)
chr4 (53-134)||(55437144-55437225)
chr4 (53-134)||(15173224-15173305)
chr4 (68-134)||(39691070-39691136)
chr4 (56-134)||(52315118-52315196)
chr4 (53-101)||(21523625-21523673)
chr4 (53-101)||(27330030-27330078)
[»] chr5 (4 HSPs)
chr5 (53-101)||(11064734-11064782)
chr5 (53-134)||(16937804-16937885)
chr5 (51-111)||(3520643-3520703)
chr5 (57-113)||(27298172-27298228)
[»] chr2 (3 HSPs)
chr2 (53-101)||(7043684-7043732)
chr2 (53-134)||(30331819-30331900)
chr2 (53-101)||(26202096-26202144)
[»] chr1 (9 HSPs)
chr1 (54-101)||(7119892-7119939)
chr1 (47-134)||(24417656-24417744)
chr1 (51-94)||(4033979-4034022)
chr1 (53-127)||(6557040-6557114)
chr1 (64-134)||(37617386-37617456)
chr1 (53-98)||(7941674-7941719)
chr1 (47-135)||(2777953-2778041)
chr1 (53-101)||(39976164-39976212)
chr1 (53-101)||(49938815-49938863)
[»] chr7 (3 HSPs)
chr7 (64-134)||(20526525-20526595)
chr7 (53-98)||(19022542-19022587)
chr7 (56-96)||(31744873-31744913)
[»] chr8 (3 HSPs)
chr8 (53-134)||(10758178-10758259)
chr8 (53-101)||(779016-779064)
chr8 (54-114)||(38750426-38750486)
[»] chr3 (3 HSPs)
chr3 (53-95)||(42237909-42237951)
chr3 (52-113)||(39980796-39980857)
chr3 (53-101)||(30668923-30668971)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 26599834 - 26599586
Alignment:
Q  11 tgtatgatatacgctatttttaggggctatattgaagaataagtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaataga 110  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26599834 tgtatgatatacactatttttaggggctatattgaagaataagttataagttattttgataaattctttcaaacaatctcacaaaacttatactaataga 26599735  T
Q  111 taaattgagataagtcaatccaaataactcagtagagatatgatataaaataattggatgatagtagttactacagtatactagaatattcacgttaggt 210  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599734 taaattgagataagtcaatccaaatagctcaacagagatatgatataaaataattggatgatagtagttactacagtatactagaatattcacgttaggt 26599635  T
Q  211 tagcttaatgtatcagacaaatttggtttttcttatttactgaacacac 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599634 tagcttaatgtatcagacaaatttggtttttcttatttactgaacacac 26599586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 34882423 - 34882342
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    ||||||| |||||||||||||||||   ||||| ||  ||||||||||||||| |||||||  ||| |||||||||||||||    
T  34882423 gtcataacttattttcataaattctcctaaacagtccaacaaaacttatactagtagataagatgaaataagtcaatccaaa 34882342  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 33887897 - 33887938
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaa 94  Q
    |||||||| |||||||||||||||| ||||||||| ||||||    
T  33887897 gtcataagctattttcataaattctctcaaacaatgtcacaa 33887938  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 33630499 - 33630451
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    ||||||||||||||| ||||||| | | ||||||||||| |||||||||    
T  33630499 gtcataagttattttaataaattttcttaaacaatctcataaaacttat 33630451  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 34430783 - 34430831
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| |||||||||||| |  |||||||||| |||||||||||    
T  34430783 gtcataagttgttttcataaattatcccaaacaatcttacaaaacttat 34430831  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 55437144 - 55437225
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||   | |||||||| | | ||||| |||||||||    
T  55437144 gtcataagttgttttcataagttctttcaaacaatttcacaaaacttatggcagtagataaactcaaataagccaatccaaa 55437225  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 15173305 - 15173224
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||| |||||||||||| |||  |||||| |||||||||||||||   | ||||||| || | |||||||||||||||    
T  15173305 gtcataagctattttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaa 15173224  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 39691136 - 39691070
Alignment:
Q  68 cataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||||||  | | |||||||||| ||||    
T  39691136 cataaattctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaa 39691070  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 52315196 - 52315118
Alignment:
Q  56 ataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    ||||||| |||| |||| ||||| |||||||||||||||||||||    | |||||||| | | |||||||||||||||    
T  52315196 ataagttgttttgataagttcttccaaacaatctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 21523625 - 21523673
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| ||||||||||||||| |||||| | |||||||| ||||    
T  21523625 gtcataagttgttttcataaattcttccaaacagtgtcacaaaatttat 21523673  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 27330078 - 27330030
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| ||||||||||| || |||||||||||||  ||||||||    
T  27330078 gtcataagttgttttcataaatcctctcaaacaatctcattaaacttat 27330030  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 11064734 - 11064782
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  11064734 gtcataagctattttcataagttctctcaaacaatctcacaaaacttat 11064782  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 16937885 - 16937804
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||| | ||||||||| ||||| |||||| ||||||||||||||| ||| |||||||  | | ||||| |||||||||    
T  16937885 gtcataagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaa 16937804  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 3520643 - 3520703
Alignment:
Q  51 aagtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagat 111  Q
    |||||||||| | ||||||||| ||||  |||||| ||||||| ||||||||||| |||||    
T  3520643 aagtcataagatgttttcataagttctcccaaacagtctcacacaacttatactagtagat 3520703  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 27298172 - 27298228
Alignment:
Q  57 taagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataa 113  Q
    |||||| ||||  ||| |||| ||||||||||||||||||||||||  |||||||||    
T  27298172 taagttgtttttctaagttctctcaaacaatctcacaaaacttatagaaatagataa 27298228  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 7043732 - 7043684
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||    
T  7043732 gtcataagttattttcataagttctttcaaacagtatcacaaaacttat 7043684  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 30331819 - 30331900
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||| | ||||||||| ||||  |||||| |||||||||||||||   | |||||||  ||| |||||||||||||||    
T  30331819 gtcataaggttttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaa 30331900  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 26202096 - 26202144
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| || |||||||||||  |||| |||||||||||||||||    
T  26202096 gtcataagttgttctcataaattctagcaaagaatctcacaaaacttat 26202144  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 7119939 - 7119892
Alignment:
Q  54 tcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  7119939 tcataagttgttttcataaattcttgcaaacagtctcacaaaacttat 7119892  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 24417744 - 24417656
Alignment:
Q  47 gaataagtcataagttattttcataaattctttcaaacaatctcacaaa-acttatactaatagataaattgagataagtcaatccaaa 134  Q
    ||||| |||||||||| |||| | | ||||||||||| | ||||||||  ||||||| ||||||||||| | | |||||||||||||||    
T  24417744 gaatatgtcataagttgtttttacacattctttcaaatagtctcacaagtacttatattaatagataaactcaaataagtcaatccaaa 24417656  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 4034022 - 4033979
Alignment:
Q  51 aagtcataagttattttcataaattctttcaaacaatctcacaa 94  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||    
T  4034022 aagtcataagttattttcataagctctctcaaacaatctcacaa 4033979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 6557040 - 6557114
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtca 127  Q
    |||||||| ||||||||||| |||| ||||| | |||||||||||||||  || ||||||| || | ||||||||    
T  6557040 gtcataagctattttcataagttctctcaaatagtctcacaaaacttatgttagtagataagttcaaataagtca 6557114  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 37617456 - 37617386
Alignment:
Q  64 ttttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    ||||||||||||||  |||||| ||||||||||||||    |||||||||| | | |||||||||||||||    
T  37617456 ttttcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaa 37617386  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 7941674 - 7941719
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaact 98  Q
    |||||||| | ||||||||||||||| |||||| ||||||||||||    
T  7941674 gtcataagctgttttcataaattcttccaaacagtctcacaaaact 7941719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 2777953 - 2778041
Alignment:
Q  47 gaataagtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaat 135  Q
    ||||| ||||||||||  |||||||| ||||   ||||| ||||||||||||||| | |||||||||  | | ||||| ||||||||||    
T  2777953 gaatacgtcataagttggtttcataagttctcctaaacagtctcacaaaacttatgcaaatagataagctaaaataagccaatccaaat 2778041  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 39976212 - 39976164
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    ||||||| |||||||||||| |||| ||||||| | |||||||||||||    
T  39976212 gtcataaattattttcataagttctctcaaacagtttcacaaaacttat 39976164  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 49938815 - 49938863
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||| | ||||||||| ||||  ||||||||||||||||||||||    
T  49938815 gtcataagctgttttcataagttctcccaaacaatctcacaaaacttat 49938863  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 20526525 - 20526595
Alignment:
Q  64 ttttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    ||||||||| |||| ||||||| |||||||||| || ||| |||||||||| | | |||||||||||||||    
T  20526525 ttttcataagttctctcaaacagtctcacaaaatttctaccaatagataaactcaaataagtcaatccaaa 20526595  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 19022587 - 19022542
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaact 98  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||    
T  19022587 gtcataagttgttttcataaattctcccaaacaatctcacaaaact 19022542  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 31744873 - 31744913
Alignment:
Q  56 ataagttattttcataaattctttcaaacaatctcacaaaa 96  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  31744873 ataacttattttcataaattctttcaaacaatctcataaaa 31744913  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 10758259 - 10758178
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaattgagataagtcaatccaaa 134  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||||  ||  |||||| || | |||||||||| ||||    
T  10758259 gtcataagctgttttcataaattctatcaaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaa 10758178  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 779064 - 779016
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| ||||| ||| ||||||||||||||||| || |||||||    
T  779064 gtcataagttgttttcgtaagttctttcaaacaatctcgcataacttat 779016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 38750426 - 38750486
Alignment:
Q  54 tcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataaa 114  Q
    ||||||| | || |||||| |||||||||| ||||||||||||||||| | | ||||||||    
T  38750426 tcataaggtgttctcataagttctttcaaataatctcacaaaacttatgcaagtagataaa 38750486  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 42237951 - 42237909
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaa 95  Q
    ||||||| |||||||||||||||||||||||||| || |||||    
T  42237951 gtcataaattattttcataaattctttcaaacaaactaacaaa 42237909  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 39980796 - 39980857
Alignment:
Q  52 agtcataagttattttcataaattctttcaaacaatctcacaaaacttatactaatagataa 113  Q
    ||||||||| | ||||||||| |||| | ||||| ||||||||||||||| ||| |||||||    
T  39980796 agtcataagctgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataa 39980857  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30668971 - 30668923
Alignment:
Q  53 gtcataagttattttcataaattctttcaaacaatctcacaaaacttat 101  Q
    |||||||||| |||||||||||| || |||||||| |||||||| ||||    
T  30668971 gtcataagttgttttcataaatttttccaaacaatttcacaaaatttat 30668923  T

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