View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492-Insertion-1 (Length: 647)
Name: NF5492-Insertion-1
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 95 - 426
Target Start/End: Complemental strand, 3497187 - 3496846
Alignment:
| Q |
95 |
gatttaggttatgtttgggtatacaaatgtaatttagttaagcacttactgaataagtccttatcatatcagcgcttacgaattacctattttctatata |
194 |
Q |
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| T |
3497187 |
gatttaggttatgtttgggtatacaattgtaatttagttaagcacttactgaataagtccttatcatatcagcgcttatgaattagctattttctatata |
3497088 |
T |
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| Q |
195 |
atgtagcagggaatgtagctaaatgttttcataaaattgggagctgttttgatgagttatcatatggaatgtattgaaatgagttgaaaacggcttat-- |
292 |
Q |
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| T |
3497087 |
atgtagcagggaatgtagttaaatgttttcataaaattgggagctgttttgatgag-tctcatatggaatgtactgaaacgaggtgaaaacggcttatag |
3496989 |
T |
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| Q |
293 |
-------ataagatttgcagtagtgacacttttgatgtaagcgtggcacatgattgacatgtgtcagtgccaacac--atgattgcattcaattaattaa |
383 |
Q |
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| T |
3496988 |
acatgtcataagatttgcagtagtgacacttttgttgtaaccgttgaacatgattgacatgtgtcagtgccaacacatatgattgcattcaattaattaa |
3496889 |
T |
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| Q |
384 |
ttttttgccactgtctgtgttagtgttgtgttcggtgtctgtg |
426 |
Q |
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| T |
3496888 |
ttttttgccactgtatgtgttagtgttgtgttcggtgtctgtg |
3496846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 14356845 - 14356915
Alignment:
| Q |
95 |
gatttaggttatgtttgggtatacaaatgtaatttagttaagcacttactgaataagtccttatcatatcag |
166 |
Q |
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| T |
14356845 |
gatttaggttatgtttgggtatacgattgtaagttagttaagcacttactgaa-aagtgcttatcatatcag |
14356915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 464 - 643
Target Start/End: Complemental strand, 27020850 - 27020674
Alignment:
| Q |
464 |
atcagcatctcatgtctaaatgatgcttatgattatacacaatctctgatttcatacgaagtgtaaggaaatctcaaatttgtctacgctaagattcaaa |
563 |
Q |
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|||||||| ||||||||||||| ||||| ||| |||||||||||||| |||||||| | | ||||||||||| ||| ||||| ||||||||||| || |
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| T |
27020850 |
atcagcatttcatgtctaaatgctgcttgtgagtatacacaatctctaatttcatataaggatcaaggaaatctcgaatctgtcttcgctaagattccaa |
27020751 |
T |
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| Q |
564 |
aatgaacattttctctggtttaatagatagaaatttccactacttattgtataacattgtatgtatattgcatgtaattt |
643 |
Q |
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| T |
27020750 |
a-tggacattttctgtggcttaatatatcgaaatttccactacttaatgtataacactg--tgtatattacatgtaattt |
27020674 |
T |
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