View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492-Insertion-3 (Length: 590)
Name: NF5492-Insertion-3
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492-Insertion-3 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 40146548 - 40147128
Alignment:
| Q |
8 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40146548 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgctgcggcaga |
40146647 |
T |
|
| Q |
108 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattcattttttccattaaccagagttaaaaattacgaaggcacatc |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146648 |
gaa-cacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatc |
40146746 |
T |
|
| Q |
208 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40146747 |
acaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
40146846 |
T |
|
| Q |
308 |
ttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatccca |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146847 |
ttcattaattcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatccca |
40146946 |
T |
|
| Q |
408 |
tacgatttccttttactatagagtcacaaaagaatgactctgatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
507 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146947 |
tacgatttccttttactatagagccacaaaagaatgactctgatgataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaat |
40147046 |
T |
|
| Q |
508 |
cgctcaactgaaattggaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttgg |
590 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40147047 |
cgctcaactgaaatt-gaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttgg |
40147128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 8103436 - 8103025
Alignment:
| Q |
8 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
107 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||| | || ||||| ||||| ||||||||||| || | |||||||||||||| | | || |
|
|
| T |
8103436 |
ttgcaggccgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactga |
8103337 |
T |
|
| Q |
108 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattcattttttccattaaccagagttaaaaattacgaaggcacatc |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| | | | || | ||||| |||||||||||||| |
|
|
| T |
8103336 |
g-aacacttgtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatc |
8103238 |
T |
|
| Q |
208 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
307 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| ||| || ||||| | |
|
|
| T |
8103237 |
acaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtat |
8103138 |
T |
|
| Q |
308 |
ttcattaactcatgggcgaaaatctcgc---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatc |
404 |
Q |
| |
|
|||||||| || ||||| ||||||| | ||||||||||||||||| |||||||||| ||| || ||||||||||||||| |||||||||| || |
|
|
| T |
8103137 |
ttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatgtc |
8103038 |
T |
|
| Q |
405 |
ccatacgatttcc |
417 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8103037 |
ccatacgatttcc |
8103025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 453 - 590
Target Start/End: Complemental strand, 8102953 - 8102817
Alignment:
| Q |
453 |
ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattggaaagccaacatggagattggtaccaaca |
552 |
Q |
| |
|
||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||| | || | ||||| |||| |
|
|
| T |
8102953 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaatt-gaaagccaacttagaaacgggtacgaaca |
8102855 |
T |
|
| Q |
553 |
aaatatcatccctccaatcactttttacacatctttgg |
590 |
Q |
| |
|
||||||| ||||| ||| |||||||| |||| |||||| |
|
|
| T |
8102854 |
aaatatcttcccttcaagcactttttgcacacctttgg |
8102817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 40409539 - 40409631
Alignment:
| Q |
8 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccg |
100 |
Q |
| |
|
|||||||||||||||| | |||||| || || ||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
40409539 |
ttgcaggccgtctagagagaacagaccataaagacaacaccatttcgtgttgtgtcacatgcaacaatgcaggtgcgctctttgtgcatgccg |
40409631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 185 - 452
Target Start/End: Original strand, 7655475 - 7655742
Alignment:
| Q |
185 |
gttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttg |
284 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| | ||| ||||| || ||| ||||||||||| |||||||||| |||| || ||||||| || | |
|
|
| T |
7655475 |
gttagaaactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtag |
7655574 |
T |
|
| Q |
285 |
ttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtt |
384 |
Q |
| |
|
||||||| ||||||| |||| |||||| || || ||||| |||| || ||||||||| ||||| |||| || | |||||| || |||||||| |
|
|
| T |
7655575 |
ctgacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtt |
7655674 |
T |
|
| Q |
385 |
tccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
452 |
Q |
| |
|
||||| ||| ||||||| || |||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
7655675 |
tccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg |
7655742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 7638027 - 7637613
Alignment:
| Q |
8 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
107 |
Q |
| |
|
|||| |||||||| ||||||| || |||| |||||||| ||||| |||||||| | ||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
7638027 |
ttgccggccgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcaga |
7637928 |
T |
|
| Q |
108 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattcattttttccattaaccagagttaaaaattacgaaggcacatc |
207 |
Q |
| |
|
||| |||||||| | ||||| || | | ||||||||| ||||| || || ||| ||| ||| | ||| || ||| | || || ||||||||||| |
|
|
| T |
7637927 |
gaat-acttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatc |
7637829 |
T |
|
| Q |
208 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
307 |
Q |
| |
|
| |||||||||| | || ||||| || ||| |||||||||| | |||||||||| |||||||||||| || ||||||||| ||||| |||| | |
|
|
| T |
7637828 |
aaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcat |
7637729 |
T |
|
| Q |
308 |
ttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatc |
404 |
Q |
| |
|
||||| || || ||||| ||||||| ||| ||||||| || ||||| |||| |||| | ||| ||||| ||||||||||||| |||| |||||| | |
|
|
| T |
7637728 |
ttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggc |
7637629 |
T |
|
| Q |
405 |
ccatacgatttccttt |
420 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
7637628 |
ctatacgatttccttt |
7637613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 194 - 420
Target Start/End: Complemental strand, 7629396 - 7629167
Alignment:
| Q |
194 |
tacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggag |
293 |
Q |
| |
|
||||||||||| ||| |||||||||| | ||| ||||| || ||| |||||||||| |||| ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
7629396 |
tacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaa |
7629297 |
T |
|
| Q |
294 |
agtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaag |
390 |
Q |
| |
|
||||| |||| |||||| || |||||||| ||||||| ||| ||||||| || ||||| |||| |||| ||| |||||||||||||||| |
|
|
| T |
7629296 |
agtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaa |
7629197 |
T |
|
| Q |
391 |
tggtattcaacatcccatacgatttccttt |
420 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
7629196 |
tggtattcaacttcccatacgatttccttt |
7629167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 425
Target Start/End: Complemental strand, 7607043 - 7606777
Alignment:
| Q |
162 |
attcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattgg |
261 |
Q |
| |
|
||||||||||| | || | | ||| |||||| || |||||||| ||| |||||||||| | ||| ||| | || ||| |||||||||| | |||||||| |
|
|
| T |
7607043 |
attcattttttgccttcatcggagataaaaactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattgg |
7606944 |
T |
|
| Q |
262 |
ttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgca---atcaagtatcc |
358 |
Q |
| |
|
|| | || ||||||| || ||||||||| ||||| |||| |||||| || |||||||| |||| || || |||||||| ||||| ||||| |
|
|
| T |
7606943 |
ttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatcc |
7606844 |
T |
|
| Q |
359 |
aaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta |
425 |
Q |
| |
|
|||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7606843 |
aaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcacta |
7606777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 7616187 - 7615778
Alignment:
| Q |
13 |
ggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaac |
112 |
Q |
| |
|
|||||||| ||||||| || ||||| ||||||||||| || ||||| || | ||||||||||||||| | |||||| ||||||| || || ||||| |
|
|
| T |
7616187 |
ggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaat- |
7616089 |
T |
|
| Q |
113 |
acttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattcattttttccattaaccagagttaaaaattacgaaggcacatcacaac |
212 |
Q |
| |
|
|||||||| | |||||| || | | ||||| || ||||| || || |||||||||| | |||||| | ||| ||| ||||||||||| ||| ||| |
|
|
| T |
7616088 |
acttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaac |
7615989 |
T |
|
| Q |
213 |
cattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcat |
312 |
Q |
| |
|
| ||||| | || ||||| || ||| |||||||||| | || ||||||| | || ||||||| || |||||||||||||| |||| |||||| |
|
|
| T |
7615988 |
cgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcat |
7615889 |
T |
|
| Q |
313 |
taactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccata |
409 |
Q |
| |
|
|| |||||||| |||| || ||| ||||||| || ||||| |||| |||| | ||| ||||| ||||||||||||| |||| ||||||| |||||| |
|
|
| T |
7615888 |
caattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccata |
7615789 |
T |
|
| Q |
410 |
cgatttccttt |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
7615788 |
cgatttccttt |
7615778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 521
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
| Q |
483 |
tattccatttcacaaaggagaaaatcgctcaactgaaat |
521 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39082834 |
tattccatttcacaaaggagaaaatcgcggaactgaaat |
39082796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 7629581 - 7629509
Alignment:
| Q |
8 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcagg |
80 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||||||| || || || ||||| || | ||||||||||||||| |
|
|
| T |
7629581 |
ttgctggccgtcttgaaataacggaacacaaggacaatactgtctcgtgttctgttatatgcaacaatgcagg |
7629509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 40 - 419
Target Start/End: Complemental strand, 6501435 - 6501058
Alignment:
| Q |
40 |
gacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgc |
139 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| || || |||| | ||| ||| | |||||| ||||| | |
|
|
| T |
6501435 |
gacaacaatgtttcatgttccatcacatgcaacaatgcaggtgtactctttgtccacgctgcaatagagga-cacacgtgatgttgacatcgttggaccc |
6501337 |
T |
|
| Q |
140 |
acctacgttcctcccatcgtcaattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagt |
239 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||| || | | | | || ||| |||||||||| |||| |||||||| | | |||||||||||||||| |
|
|
| T |
6501336 |
acctaccttcctcttatcgtccattcattttttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagt |
6501237 |
T |
|
| Q |
240 |
tagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtgg |
339 |
Q |
| |
|
|||||| ||| |||| ||||| |||| ||| ||||||| ||| || ||| |||||| |||| ||| || | || ||||| |||| || ||||| |
|
|
| T |
6501236 |
tagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtgg |
6501137 |
T |
|
| Q |
340 |
ttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcctt |
419 |
Q |
| |
|
|||||| |||||| ||||||||||| | | |||||||||| |||||||| || |||||| | | ||||||||||||||| |
|
|
| T |
6501136 |
ttgttgtaatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatattcagcgttccatacgatttcctt |
6501058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 11969713 - 11969553
Alignment:
| Q |
164 |
tcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtt |
263 |
Q |
| |
|
|||||||||||| | | | |||||| ||| || ||||| |||||| | |||||| | | || ||||| |||||||||||||| ||| |||||||||| | |
|
|
| T |
11969713 |
tcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggct |
11969614 |
T |
|
| Q |
264 |
ttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggc |
324 |
Q |
| |
|
||||| | || |||| | |||||||||| |||||| |||| |||||| || |||||||| |
|
|
| T |
11969613 |
ttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggc |
11969553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
| Q |
449 |
gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
507 |
Q |
| |
|
||||| || |||||| ||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11969428 |
gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat |
11969370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 452
Target Start/End: Original strand, 8935318 - 8935706
Alignment:
| Q |
66 |
atgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattc |
165 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||||||| |||||||| | |||||| || | | ||||||||| || || || || |||| |
|
|
| T |
8935318 |
atgcaacaatgcaggtgtactctttgtccatgccagatcagagaat-acttgtgttgctgacattctagaacccacctacgtaccaccaattgttgattc |
8935416 |
T |
|
| Q |
166 |
attttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtttt |
265 |
Q |
| |
|
||||||| | |||||| |||| || ||||||||||||||| |||||||||| | || ||||| || |||||| ||||||| | |||||||||| |
|
|
| T |
8935417 |
attttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgc |
8935516 |
T |
|
| Q |
266 |
acatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaac |
362 |
Q |
| |
|
|||||||||| || || |||||||| |||| |||| |||||| || || ||||| ||||||| ||| ||||||| || ||||| |||| |||| |
|
|
| T |
8935517 |
tcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaac |
8935616 |
T |
|
| Q |
363 |
tcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
452 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||| || |||||||||||||| ||| | ||| |||||||||| ||||||||| |
|
|
| T |
8935617 |
ctccaacactagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatg |
8935706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 345
Target Start/End: Original strand, 8934377 - 8934655
Alignment:
| Q |
66 |
atgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcaattc |
165 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||| |||||||| | |||||| || | | ||||||||| ||||| || || |||| |
|
|
| T |
8934377 |
atgcaacaatgcagatgtactctttgtccatgccagatcagagaat-acttgtgttgctgacattctagaacccacctacgtacctccaattgttgattc |
8934475 |
T |
|
| Q |
166 |
attttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtttt |
265 |
Q |
| |
|
||||||| | |||||| | |||| || ||||||||||||||| |||||||||| | || ||||| || |||||| ||||||| | |||||||||| |
|
|
| T |
8934476 |
attttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgc |
8934575 |
T |
|
| Q |
266 |
acatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg |
345 |
Q |
| |
|
|||||||||| || || |||||||| |||| |||| |||||| || |||||||| ||||||| ||| ||||||| |
|
|
| T |
8934576 |
tcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttg |
8934655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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