View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492-Insertion-4 (Length: 581)
Name: NF5492-Insertion-4
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 25 - 477
Target Start/End: Original strand, 1067375 - 1067829
Alignment:
| Q |
25 |
tcggtttcaggcaccaacattcaagattggttttaacttgctgagtctcggaatcagttttgtgggcgtcaacaagctaacacatgtcggaagtatattt |
124 |
Q |
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| T |
1067375 |
tcggtttcagacaccaacattcaagattggtttcaacttgctgagtctcggaatcagttttgtgggcgtcaacaagctaacacatgtcggaagtatgttt |
1067474 |
T |
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| Q |
125 |
gtttagaaatgctggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatcacggtacacctga |
224 |
Q |
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| T |
1067475 |
gtttagaaatgctggtgctaaccaatcaaaaacaattagaatcaaaagcctccaaaccagaccttacaattgaataaatttccaatcacggtacacctga |
1067574 |
T |
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| Q |
225 |
aatttcatgaaaaatagccagacaatggacactaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaattttttgcaagaaa |
324 |
Q |
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| T |
1067575 |
aatttcatgaaaaatagccagacaatggacagtaaccaatcacactataaaactgagacaaattctaacatcggacacaacactaattttttgcaagaaa |
1067674 |
T |
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| Q |
325 |
atgttggttggaaaacactgctaattctactcacaagaaaaacactcactactataaacatataaaaagcaaaaccacacgcacgaggtactcattgttc |
424 |
Q |
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| T |
1067675 |
atgttggttggaaaacactgctaattctactcacaagaaaaacactcactactataaacatataaaaagcaaaaccacacgcacgaggtactcattgttc |
1067774 |
T |
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| Q |
425 |
tgttctgttctgttacaaacagcaccgtgaaactctttctc--tctctaacctct |
477 |
Q |
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| T |
1067775 |
tgttctgttctgttacaaacagcaccgtgaaactctttctctttctctaacctct |
1067829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 1067835 - 1067896
Alignment:
| Q |
520 |
tttcactccatggatgcaaacctcgctggcttttctcattatccccgcacttctcttcgttt |
581 |
Q |
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| T |
1067835 |
tttcactccatggatgcaaacctcgctggcttttctcattatccccgcacttctcttcgttt |
1067896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 1067165 - 1067234
Alignment:
| Q |
191 |
caattgaataaatttccaatcacggtacacctgaaatttcatgaaaaatagccagacaatggacactaac |
260 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctgaaatttcatgaaaaataaccagataatggacagtaac |
1067234 |
T |
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