View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_1 (Length: 686)

Name: NF5492_high_1
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_1
NF5492_high_1
[»] chr8 (1 HSPs)
chr8 (10-670)||(8369035-8369695)


Alignment Details
Target: chr8 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 10 - 670
Target Start/End: Complemental strand, 8369695 - 8369035
Alignment:
Q  10 acatcatcatagatgacacactactaaatagaaccgctgaatagttttctgcttaaactattaatggataaacaaatgcaatcaggcagcaactttgaca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369695 acatcataatagatgacacactactaaatagaaccgctgaatagttttctgcttaaactattaatggataaacaaatgcaatcaggcagcaactttgaca 8369596  T
Q  110 agggaaacaaaccacaagggaatcatcatgatagagagttgtttgcaaatgttaacacatattccaattgtagtcttgcttttgaggttttcaatgaaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369595 agggaaacaaaccacaagggaatcatcatgatagagagttgtttgcaaatgttaacacatattccaattgtagtcttgcttttgaggttttcaatgaaag 8369496  T
Q  210 gggaatatggaacttgatcatttgcaaatcaatgactgtgggtttcaatttaaaggcacagaataagagtgttttaaatggaaagagcagcaaaaaggaa 309  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369495 gggaataaggaacttgatcatttgcaaatcaatgactgtgggtttcaatttaaaggcacagaataagagtgttttaaatggaaagagcagcaaaaaggaa 8369396  T
Q  310 aactgtgtcaacacttttggaaaccccggcccctaactcttaatacatccattgtcattaaagcaaaatcactttatactttgtataataacaaacaacg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369395 aactgtgtcaacacttttggaaaccccggcccctaactcttaatacatccattgtcattaaagcaaaatcactttatactttgtataataacaaacaacg 8369296  T
Q  410 aggaagaaataaatagaattcaatcaactcgtgaaattcgggttgtatacattacaatgtaactcagccttacattccgtatgatttgtaagtcaggaca 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369295 aggaagaaataaatagaattcaatcaactcgtgaaattcgggttgtatacattacaatgtaactcagccttacattccgtatgatttgtaagtcaggaca 8369196  T
Q  510 acagccgccgccacaacagaaactgctgccacgcctccaagcacaccaacagctccatgcgattctccttccattttcgcaacatatgactccatttggc 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8369195 acagccgccgccacaacagaaactgctgccacgcctccaagcacaccaacagctccatgagattctccttccattttcgcaacatatgactccatttggc 8369096  T
Q  610 ctgtgcaataatttcataaatttaagtattttccccattataagaaaagcgaccaaaatgg 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369095 ctgtgcaataatttcataaatttaagtattttccccattataagaaaagcgaccaaaatgg 8369035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University