View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_10 (Length: 474)

Name: NF5492_high_10
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_10
NF5492_high_10
[»] chr6 (26 HSPs)
chr6 (324-461)||(26964088-26964225)
chr6 (171-303)||(31290833-31290965)
chr6 (324-461)||(26650847-26650984)
chr6 (324-461)||(26756815-26756952)
chr6 (102-246)||(26629201-26629346)
chr6 (102-246)||(26735177-26735322)
chr6 (175-281)||(26963980-26964086)
chr6 (175-281)||(26650739-26650845)
chr6 (175-281)||(26756707-26756813)
chr6 (235-304)||(27652757-27652826)
chr6 (282-338)||(27422832-27422888)
chr6 (395-442)||(26965931-26965978)
chr6 (389-436)||(27652664-27652711)
chr6 (389-442)||(26640358-26640411)
chr6 (389-442)||(26746324-26746377)
chr6 (245-304)||(26640274-26640331)
chr6 (245-304)||(26746240-26746297)
chr6 (316-355)||(26629362-26629401)
chr6 (316-355)||(26735338-26735377)
chr6 (262-304)||(27506761-27506803)
chr6 (183-227)||(26964723-26964767)
chr6 (346-429)||(28783611-28783694)
chr6 (309-406)||(27606872-27606969)
chr6 (389-461)||(26629415-26629487)
chr6 (389-461)||(26735391-26735463)
chr6 (102-162)||(27422971-27423031)
[»] scaffold0003 (2 HSPs)
scaffold0003 (282-338)||(64475-64531)
scaffold0003 (102-162)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (254-305)||(18719305-18719354)
chr4 (254-304)||(18674703-18674751)
chr4 (254-301)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26964088 - 26964225
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||||| |  |||||||||||||||||||| |||||||||| ||||    
T  26964088 tttatctgctactccttatattttttcttccatttctttgtgaagtcttacaatctggtaatccgtttctctttaatgtatctcgtgaattaacacttcc 26964187  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  26964188 tttattcatatgacttataaatcttttaaaatgaattt 26964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 31290833 - 31290965
Alignment:
Q  171 tgttgtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgt 270  Q
    |||||||| || |||||||||||||||||  ||||||||||||| | ||| |||||| ||||| ||||| |||||||||||  |||||||||||||||||    
T  31290833 tgttgtgggaacatttatatgtatgaactagatggtataaagaagcttttttcctatcaaattttgttttgatttggcaaatggaagtggagaatttcgt 31290932  T
Q  271 ttcataactcaaagttttggttttgtacttcca 303  Q
    |||||||||||||||||||||||||||||||||    
T  31290933 ttcataactcaaagttttggttttgtacttcca 31290965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26650847 - 26650984
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26650847 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26650946  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||||||||||||||| |||| | |||| ||||||||    
T  26650947 tttattcatatgacttaaaaatattttaaaatgaattt 26650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26756815 - 26756952
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26756815 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26756914  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||||||||||||||| |||| | |||| ||||||||    
T  26756915 tttattcatatgacttaaaaatattttaaaatgaattt 26756952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 26629201 - 26629346
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 201  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26629201 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26629300  T
Q  202 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 246  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26629301 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 26735177 - 26735322
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 201  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26735177 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26735276  T
Q  202 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 246  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26735277 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26735322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26963980 - 26964086
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  ||||||||||||||||| |||||||| | || ||||| |||||| ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26963980 gtggaaacgtttatatgtatgaacttgatggtatacaaaagcctttttcctatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26964079  T
Q  275 taactca 281  Q
    |||||||    
T  26964080 taactca 26964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26650739 - 26650845
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26650739 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26650838  T
Q  275 taactca 281  Q
    |||||||    
T  26650839 taactca 26650845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26756707 - 26756813
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26756707 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26756806  T
Q  275 taactca 281  Q
    |||||||    
T  26756807 taactca 26756813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 27652826 - 27652757
Alignment:
Q  235 tgtttcgatttggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  27652826 tgttttgatctggcaaatggaagtggagaatttcgtttcataactcaaaattttggttttatgcttccaa 27652757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 27422888 - 27422832
Alignment:
Q  282 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 338  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  27422888 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 27422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 26965931 - 26965978
Alignment:
Q  395 tttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26965931 tttaatgtatctcatgaattaatatttcctttatacatatgacttata 26965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 27652711 - 27652664
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatga 436  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27652711 tttctctttaatgtatctcatgaattaatatttactttattcatatga 27652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 26640358 - 26640411
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26640358 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26640411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 26746324 - 26746377
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26746324 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26746377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 26640274 - 26640331
Alignment:
Q  245 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 26746240 - 26746297
Alignment:
Q  245 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 26629362 - 26629401
Alignment:
Q  316 aatttacttttatctgctactccatatattttttcttcca 355  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26629362 aatttccttttatctgctactccatatattttttcttcca 26629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 26735338 - 26735377
Alignment:
Q  316 aatttacttttatctgctactccatatattttttcttcca 355  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26735338 aatttccttttatctgctactccatatattttttcttcca 26735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27506803 - 27506761
Alignment:
Q  262 gaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  27506803 gaatatcgtttcatagctcaaagttttggttttgtacttccaa 27506761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 26964723 - 26964767
Alignment:
Q  183 atttatatgtatgaactttatggtataaagaaacctttctcctat 227  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  26964723 atttatatgtatgaacttgatggtataaagaagcctttttcctat 26964767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 28783611 - 28783694
Alignment:
Q  346 ttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcctttatt 429  Q
    |||||||||||||| ||| ||| ||| |||||| ||| |    ||||||||||||||||||||||  |||| ||||||||||||    
T  28783611 ttttcttccatttcttttggaattctgacaaatcggttcaacatttctctttaatgtatctcatggtttaatatttcctttatt 28783694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 27606969 - 27606872
Alignment:
Q  309 aaaaattaatttacttttatctgctactccatatattttttcttccatttcattttgaagt-cttacaaattggtactttgtttctctttaatgtatct 406  Q
    |||||||||| ||||||||||| |||||   ||| |||||||||| |||| ||||| |||| ||||||||||||| |    ||||||||||||||||||    
T  27606969 aaaaattaatatacttttatctcctacttgttatcttttttcttctattt-atttttaagttcttacaaattggttcgacatttctctttaatgtatct 27606872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 26629415 - 26629487
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| ||||||||    
T  26629415 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaattt 26629487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 26735391 - 26735463
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| ||||||||    
T  26735391 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaattt 26735463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 162  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  27423031 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 27422971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 64475 - 64531
Alignment:
Q  282 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 338  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  64475 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 64531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 64332 - 64392
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 162  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  64332 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 64392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 18719354 - 18719305
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaat 305  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18719354 gaagtggagaatttcgtttcataagtc--agttttggttttgtacttccaat 18719305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 18674751 - 18674703
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  18674751 gaagtggagaatttcatttcataaatca--gttttggttttgtacttccaa 18674703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 18692832 - 18692787
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttc 301  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||||||    
T  18692832 gaagtggagaatttcatttcataaatc--agttttggttttgtacttc 18692787  T

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