View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_18 (Length: 387)
Name: NF5492_high_18
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 50869808 - 50870164
Alignment:
| Q |
17 |
gaataaagaaaaaactacagtgaaattatgcctaaagtaaaagatgttacagtgaaatagcatcaaat-caattgccacaaatggctaaagataggtcta |
115 |
Q |
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| T |
50869808 |
gaataaagaaaaaactacagtgaaattatgcctaaagtaaaagatgttacagtgaaatagcatcaaattcaattgccacaaatggctaaagataggtcta |
50869907 |
T |
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| Q |
116 |
aattaatcctttcattgacagtagatgatattctagagcagtccttgtagttgtagctggggttaggacatgaaattgcctcactgatttcactggccga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50869908 |
aattaatcctttcattgacagtagatgatattctagagcagtccttgtagttgtagctggggttaggacatgaaattgcctcactgatttcactggccga |
50870007 |
T |
|
| Q |
216 |
ataagaagcattacttgtctgaggtgaaggattttgcaatgttaacgacaatgacaactcatgtcctccttctacatgtgctctgtcagtgttcacaact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50870008 |
ataagaagcattacttgtctgaggtgaaggattttgcaatgttaacgacaatgacaactcatgtcctccttctacatgtgctctgtcagttttcacaact |
50870107 |
T |
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| Q |
316 |
ccattaattgaccatgaagggctctttctgtcatttacattactagcctgtacaagg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870108 |
ccattaattgaccatgaagggctctttctgtcatttacattactagcctgtacaagg |
50870164 |
T |
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