View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_19 (Length: 380)

Name: NF5492_high_19
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_19
NF5492_high_19
[»] chr1 (3 HSPs)
chr1 (9-185)||(42169655-42169831)
chr1 (183-362)||(42169384-42169572)
chr1 (103-160)||(48064182-48064241)
[»] chr7 (2 HSPs)
chr7 (299-348)||(7725551-7725600)
chr7 (103-132)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (313-362)||(333898-333947)
[»] chr4 (2 HSPs)
chr4 (103-157)||(17823012-17823068)
chr4 (104-132)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (103-131)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (104-132)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 42169831 - 42169655
Alignment:
Q  9 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggcc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42169831 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggcc 42169732  T
Q  109 ctgtttggataaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169731 ctgtttggataaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 183 - 362
Target Start/End: Complemental strand, 42169572 - 42169384
Alignment:
Q  183 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa 42169473  T
Q  283 t--------gtgtagccatggatta-ttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 362  Q
    |        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169472 tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 42169384  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  103 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 160  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
Q  299 attattacctatggtgagtttcagctatacccatcatagtaagataatgg 348  Q
    ||||||||||||||||||||||||||||| |  ||| |||||||||||||    
T  7725551 attattacctatggtgagtttcagctatatcagtcacagtaagataatgg 7725600  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  103 taggccctgtttggataaacaacttaatta 132  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 333947 - 333898
Alignment:
Q  313 tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc 362  Q
    |||||||||||||| | ||||||||||||||| || ||||| ||||||||    
T  333947 tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagc 333898  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  103 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 157  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  104 aggccctgtttggataaacaacttaatta 132  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  103 taggccctgtttggataaacaacttaatt 131  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  104 aggccctgtttggataaacaacttaatta 132  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

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