View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_20 (Length: 377)
Name: NF5492_high_20
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 20009939 - 20009596
Alignment:
| Q |
10 |
aagaatatggtagggtttatccaccactattgtgttctgcacccattaaggtatatgtcaatatgtgaccactaacctggactaaattcttgtaatgaat |
109 |
Q |
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| T |
20009939 |
aagaaaatggtagggtttatccaccactattgtgttctgcacccattaaggtatatgtcaatatgtgaccgctaacctggactaaattcttgtaatgagt |
20009840 |
T |
|
| Q |
110 |
ttaccaaaatcatttatctcatatgcttttcttgaagcctggaaactgagaagcttaagtttgaaagaattgaagtgatggtttaatgtatgtgtcctct |
209 |
Q |
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| T |
20009839 |
ttaccaaaataatttatcccaaatgcttttcttgaagcctggtaa-------gcttaagtttgaaagaattgaagtgatggtttaatttatgtgtcctcc |
20009747 |
T |
|
| Q |
210 |
attgtgcagtttcaaaatgcaagttacttgagtcctcaatacaaaacaactggaaaagggtttctgaagctccagctaattaatcagagatcggatttct |
309 |
Q |
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| T |
20009746 |
attgtgcagtttcaaaatgcaagttacttgaatcctcaatacaaaacaactggaaaagggtttctgaagctccagctaattaatcagagatcggatttct |
20009647 |
T |
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| Q |
310 |
catttgcattgttttctggtggcctctcaaatgtaagaccatcgttagttt |
360 |
Q |
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| T |
20009646 |
catttgcattgttttctggtggcctctcaaatgtaagaccatcgttagttt |
20009596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 47 - 360
Target Start/End: Original strand, 6730740 - 6731047
Alignment:
| Q |
47 |
tgcacccattaaggtatatgtcaatatgtgaccactaacctggactaaattctt-gtaatgaatttaccaaaatcatttatctcatatgcttttcttgaa |
145 |
Q |
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| T |
6730740 |
tgcacctattaaggtatatgtctggatgtgaccactaacctggactaaattctttgtaatgaatttaccaaaataatttatcacaaatgcttttcttgaa |
6730839 |
T |
|
| Q |
146 |
gcctggaaactgagaagcttaagtttgaaagaattgaagtgatggtttaatgtatgtgtcctctattgtgcagtttcaaaatgcaagttacttgagtcct |
245 |
Q |
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| T |
6730840 |
gcctgg-------gaagcttaagtttgaaagaattgaagtgatggtttaatgtatgtgtcctctattatgcagtttcaaaatgcaagttacttgaatcct |
6730932 |
T |
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| Q |
246 |
caatacaaaacaactggaaaagggtttctgaagctccagctaattaatcagagatcggatttctcatttgcattgttttctggtggcctctcaaatgtaa |
345 |
Q |
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| T |
6730933 |
caatacaaaacaacaggaaaagggtttctgaagcttcaacttattaatcagagatcagatttctcatttgcattgttttctggtggcctctcaaatgtaa |
6731032 |
T |
|
| Q |
346 |
gaccatcgttagttt |
360 |
Q |
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||||||| ||||||| |
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| T |
6731033 |
gaccatcattagttt |
6731047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 44 - 360
Target Start/End: Complemental strand, 26189722 - 26189410
Alignment:
| Q |
44 |
ttctgcacccattaaggtatatgtcaatatgtgaccactaacctggactaaattcttgtaatgaatttaccaaaatc--atttatctcatatgcttttct |
141 |
Q |
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||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
26189722 |
ttctgcacctattaaggcatatgtctggatgtgaccactaacctggactaaattcttgtaatgaatttaccaaaatataatttatcacaaatgcttttct |
26189623 |
T |
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| Q |
142 |
tgaagcctggaaactgagaagcttaagtttgaaagaattgaagtgat--ggtttaatgtatgtgtcctctattgtgcagtttcaaaatgcaagttacttg |
239 |
Q |
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|||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
26189622 |
tgaagcctgggaact--------taagtttgaaagaattgaagtgatatggtttaatgtatgtgtcctctattatgcagttttaaaatgcaagttacttg |
26189531 |
T |
|
| Q |
240 |
agtcctcaatacaaaacaactggaaaagggtttctgaagctccagctaattaatcagagatcggatttctcatttgcattgttttctggtggcctctcaa |
339 |
Q |
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| |||| ||||||||||||| | |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26189530 |
aatccttaatacaaaacaacagaaaaaaggtttctgaagcttcagcttattaatcagagatcagatttctcatttgcattgttttctggtggcctctcaa |
26189431 |
T |
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| Q |
340 |
atgtaagaccatcgttagttt |
360 |
Q |
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||||||||||||| ||||||| |
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| T |
26189430 |
atgtaagaccatcattagttt |
26189410 |
T |
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