View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_21 (Length: 373)

Name: NF5492_high_21
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_21
NF5492_high_21
[»] chr4 (15 HSPs)
chr4 (18-346)||(251740-252067)
chr4 (272-334)||(5553780-5553842)
chr4 (94-150)||(5852254-5852310)
chr4 (94-165)||(5570365-5570436)
chr4 (93-165)||(5582574-5582646)
chr4 (93-150)||(5554112-5554169)
chr4 (271-332)||(5885920-5885981)
chr4 (270-334)||(3749523-3749587)
chr4 (101-165)||(5559897-5559961)
chr4 (270-326)||(5847704-5847760)
chr4 (93-165)||(5858952-5859024)
chr4 (101-165)||(5894459-5894523)
chr4 (72-163)||(5538486-5538577)
chr4 (265-331)||(5559583-5559649)
chr4 (101-138)||(3749867-3749904)
[»] scaffold0454 (1 HSPs)
scaffold0454 (265-323)||(1018-1076)
[»] chr8 (2 HSPs)
chr8 (265-323)||(1485836-1485894)
chr8 (72-132)||(1486170-1486230)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 251740 - 252067
Alignment:
Q  18 caaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgcacttgctgaagaatcaactaccgatgaatttgacaattcaagtagtcttttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  251740 caaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgcacttgctgaagaatcaattaccgatgaatttgacaattcaagtagtcttttc 251839  T
Q  118 tgtctccaacatctccaaaaactgaatttggctgctaacaatttcaatagagatttctcgactcaaaaggtggtaactcttgatatctctattaattctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  251840 tgtctccaacatctccaaaaactgaatttggctgctaacaatttcaatagagatttctcgactcaaaatgtggtaactcttgatatctctattaattctt 251939  T
Q  218 actcactgggacgagagctgaaacttgagaactcaaatctacaaagcaagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttg 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251940 actcactgggacgagagctgaaacttgagacctcaaatctacaaagcaagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttg 252039  T
Q  318 agcatgtctaactgtgaatcgatctatca 346  Q
    |||||||||||||||| ||||||||||||    
T  252040 agcatgtctaactgtg-atcgatctatca 252067  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 5553842 - 5553780
Alignment:
Q  272 tgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtga 334  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  5553842 tgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgtataactgtga 5553780  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 5852254 - 5852310
Alignment:
Q  94 tttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggct 150  Q
    ||||| |||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  5852254 tttgataattcaagtagtcttttcagtctcgaacatctccagaaactgaatttggct 5852310  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 5570365 - 5570436
Alignment:
Q  94 tttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 165  Q
    ||||| |||||||||||||||||  ||||||| ||||| |||||| |||| ||||||| |||||||||||||    
T  5570365 tttgataattcaagtagtctttttagtctccatcatcttcaaaaattgaacttggctgataacaatttcaat 5570436  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 5582574 - 5582646
Alignment:
Q  93 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 165  Q
    |||||| ||| |||| ||||||||  |||| |||||||| |||||| |||| |||||||||||||||||||||    
T  5582574 atttgataatgcaagcagtctttttagtcttcaacatcttcaaaaattgaacttggctgctaacaatttcaat 5582646  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 5554169 - 5554112
Alignment:
Q  93 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggct 150  Q
    |||||| | |||||||||||||||| ||||| | |||||||| |||||||||||||||    
T  5554169 atttgatagttcaagtagtcttttcagtctcgatcatctccagaaactgaatttggct 5554112  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 5885920 - 5885981
Alignment:
Q  271 atgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgt 332  Q
    |||||||| | ||||||||||| |||||| ||||  |||||||||||||||||| |||||||    
T  5885920 atgaatggagtaatgctttgttaccgctgcgtgacttgcaagagttgagcatgtataactgt 5885981  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 3749587 - 3749523
Alignment:
Q  270 catgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtga 334  Q
    ||||||| | ||||||||||||||||| || ||||  ||||||| |||||||||||| |||||||    
T  3749587 catgaattgagcaatgctttgttgccgttgcgtgacttgcaagaattgagcatgtcttactgtga 3749523  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 5559961 - 5559897
Alignment:
Q  101 attcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 165  Q
    ||||||| ||||||||| || | ||||| ||||| |||||||||||||||| |||| ||||||||    
T  5559961 attcaagcagtcttttcagtttgcaacacctccagaaactgaatttggctgataactatttcaat 5559897  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 5847704 - 5847760
Alignment:
Q  270 catgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtct 326  Q
    ||||||||| ||||||||||||||||  || |||| |||||| ||||||||||||||    
T  5847704 catgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagcatgtct 5847760  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 5859024 - 5858952
Alignment:
Q  93 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 165  Q
    |||||| ||| |||| ||||| ||  |||||||||||||||||||| |||| ||||||  |||||||||||||    
T  5859024 atttgaaaatacaagcagtctatttggtctccaacatctccaaaaagtgaacttggcttttaacaatttcaat 5858952  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 5894459 - 5894523
Alignment:
Q  101 attcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 165  Q
    ||||||| |||||||||  ||||| ||||||| |||||||||| ||||||  |||||||||||||    
T  5894459 attcaagcagtcttttcaatctcctacatctcaaaaaactgaacttggcttataacaatttcaat 5894523  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 5538486 - 5538577
Alignment:
Q  72 tgaagaatcaactaccgatgaatttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttca 163  Q
    |||||||||||  || | || |||||| ||| |||||||||||||  |||| ||| |||| || ||| |||| |||||||||||||||||||    
T  5538486 tgaagaatcaatcactggtggatttgataatacaagtagtctttttagtcttcaaaatcttcagaaattgaacttggctgctaacaatttca 5538577  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 5559649 - 5559583
Alignment:
Q  265 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactg 331  Q
    |||||||||||||| ||||||||||||||||| || ||| |||  ||||  ||| ||||||||||||    
T  5559649 aagggcatgaatggagcaatgctttgttgccgttgcgtggtctagaagaactgaccatgtctaactg 5559583  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 3749904 - 3749867
Alignment:
Q  101 attcaagtagtcttttctgtctccaacatctccaaaaa 138  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  3749904 attcaagtagtcttttcagtcttcaacatctccaaaaa 3749867  T

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Target: scaffold0454 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 1076 - 1018
Alignment:
Q  265 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatg 323  Q
    |||| ||||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||    
T  1076 aaggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatg 1018  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 1485894 - 1485836
Alignment:
Q  265 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatg 323  Q
    |||| ||||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||    
T  1485894 aaggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatg 1485836  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 1486230 - 1486170
Alignment:
Q  72 tgaagaatcaactaccgatgaatttgacaattcaagtagtcttttctgtctccaacatctc 132  Q
    |||||||||||  || | || |||| |||||||||||||||||||  ||||||||||||||    
T  1486230 tgaagaatcaatcactggtggatttaacaattcaagtagtctttttagtctccaacatctc 1486170  T

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