View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_24 (Length: 366)
Name: NF5492_high_24
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 24692317 - 24692654
Alignment:
| Q |
12 |
tcatcacattttcttttggcatctcatttcaccacatatcctctattgataggttttgggcctttgaaatcataaatttcaaatgctacttttttagcca |
111 |
Q |
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| T |
24692317 |
tcatcacatttacttttggcatctcatttaaccacatatcctctattgataggttttggacctttgaaatcataaatttctaatgctacttttttagcca |
24692416 |
T |
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| Q |
112 |
tatttaagaaaccagcaacacatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggact |
211 |
Q |
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| T |
24692417 |
tatttaagaaaccagcaacacatgtagtctaagaccctctatattttccttctacaacttatatcatttcaaaacttgatttctgcagaaaactgggact |
24692516 |
T |
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| Q |
212 |
tcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctga |
311 |
Q |
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| T |
24692517 |
tcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctga |
24692616 |
T |
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| Q |
312 |
atctgtctttatttccctagaatgtttaatcaccttga |
349 |
Q |
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| T |
24692617 |
acctgtctttaattccctagaatgtataatcaccttga |
24692654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 131 - 329
Target Start/End: Original strand, 24731949 - 24732145
Alignment:
| Q |
131 |
acatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaactttc |
230 |
Q |
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| T |
24731949 |
acatgtagtataaaatcctatatattttccttctactactta--tcatatcaaaacttgaaatgtgcagacaactgggacttcgtcaacattgaactttc |
24732046 |
T |
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| Q |
231 |
gtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaatctgtctttatttccct |
329 |
Q |
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| T |
24732047 |
gtgtaccatcttggagtcacgcagatggtgccaaggcgatattgaattctgaaactttatctcttccagctccaggtctgaatctctctttacttccct |
24732145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 24723232 - 24723387
Alignment:
| Q |
174 |
atcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatatt |
273 |
Q |
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| T |
24723232 |
atcatttcaaaacttgaaatgtgcaggcaattgggacttcgtcaacattgaactttcgtataccatcatggactcttgcaaatggtgccaaggcactatt |
24723331 |
T |
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| Q |
274 |
gaattctgaagctttatctcttccagctccaggtctgaatctgtctttatttccct |
329 |
Q |
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| T |
24723332 |
gaattctgaaactttacctctgccagctccaggtctgaatctatctttatttccct |
24723387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 24764199 - 24764365
Alignment:
| Q |
112 |
tatttaagaaaccag-caacacatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggac |
210 |
Q |
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| T |
24764199 |
tatttaagaaaccaaacaaaacatgtaatataatatcctgaatattttccttcgacaactta--tcatttcaaaacttgaaatatgcagaaaactgggac |
24764296 |
T |
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| Q |
211 |
ttcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattc |
279 |
Q |
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||| || || |||||||| ||| |||||||||||| || ||| | ||||||||||||| ||||||||| |
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| T |
24764297 |
ttcgtcaacgttgaacttccgtctaccatcttggactctcgcgggtggtgccaaggcgaaattgaattc |
24764365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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