View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_27 (Length: 349)

Name: NF5492_high_27
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_27
NF5492_high_27
[»] chr8 (2 HSPs)
chr8 (1-285)||(35352553-35352842)
chr8 (201-247)||(35348740-35348786)
[»] chr1 (2 HSPs)
chr1 (243-288)||(48760991-48761036)
chr1 (74-154)||(52690276-52690356)
[»] chr4 (2 HSPs)
chr4 (171-215)||(32303918-32303962)
chr4 (171-212)||(36153463-36153504)
[»] chr2 (4 HSPs)
chr2 (184-220)||(44158321-44158357)
chr2 (97-212)||(19004907-19005028)
chr2 (154-210)||(35049544-35049600)
chr2 (171-215)||(42807477-42807521)
[»] chr6 (2 HSPs)
chr6 (154-216)||(31778822-31778884)
chr6 (74-154)||(27982477-27982557)
[»] chr3 (1 HSPs)
chr3 (162-216)||(53831358-53831412)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 35352842 - 35352553
Alignment:
Q  1 gattgttgaatcttttcgcatctgtcttaggctcatgtttgaaattttacaatccgtataaattctattagatttctgctcttatctcggcatgtctcgc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  35352842 gattgttgaatcttttcgcatgtgtcttaggctcatgtttgaaattttacaatctgtataaattctattagatttcagctcttatctcggcatgtctcgc 35352743  T
Q  101 tcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt------caaacgagatttaatattacacatacattacttaagttac 194  Q
    | |||| ||||||||||||| |||||||| ||||  ||||||||||||||||||      |||| |||||||||| ||||||||||||||||||||||||    
T  35352742 ttccactcagctaaactgat-aaaatactgatgcgcttgttaaccaacgcaagtgtaaatcaaatgagatttaattttacacatacattacttaagttac 35352644  T
Q  195 gtcgcatgagttaactcacgctagttacaaagatgttatacccatagacttggacggtgttcatctaagaaaaaggtatagtctcatgtga 285  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35352643 gtcgcatgagttaactcacgctagttacaaaggtgttatacccatagacttggacggtgttcatctaagaaaaaggtacagtctcatgtga 35352553  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 35348740 - 35348786
Alignment:
Q  201 tgagttaactcacgctagttacaaagatgttatacccatagacttgg 247  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||    
T  35348740 tgagttaactcacgccagttacaaagttgttatactcatagacttgg 35348786  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 48760991 - 48761036
Alignment:
Q  243 cttggacggtgttcatctaagaaaaaggtatagtctcatgtgaaag 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48760991 cttggacggtgttcatctaagaaaaaggtatagtctcatgtgaaag 48761036  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 52690356 - 52690276
Alignment:
Q  74 ttctgctcttatctcggcatgtctcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt 154  Q
    |||||||||| || | ||| || || |||||||||| |||||||||  ||||||||||||| || |||||| |||||||||    
T  52690356 ttctgctcttctcccagcaagtttcactcccacccaactaaactgacaaaaatactcatgcgttagttaactaacgcaagt 52690276  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 32303918 - 32303962
Alignment:
Q  171 ttacacatacattacttaagttacgtcgcatgagttaactcacgc 215  Q
    |||||||||| | |||||||| |||||||||||||||||||||||    
T  32303918 ttacacatacgtgacttaagtcacgtcgcatgagttaactcacgc 32303962  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 36153463 - 36153504
Alignment:
Q  171 ttacacatacattacttaagttacgtcgcatgagttaactca 212  Q
    |||||||| ||| |||||||||||||| ||||||||||||||    
T  36153463 ttacacatgcatgacttaagttacgtcacatgagttaactca 36153504  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 44158321 - 44158357
Alignment:
Q  184 acttaagttacgtcgcatgagttaactcacgctagtt 220  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44158321 acttaagttacgccgcatgagttaactcacgctagtt 44158357  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 19005028 - 19004907
Alignment:
Q  97 tcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaag------tcaaacgagatttaatattacacatacattacttaag 190  Q
    |||||| ||||||||||||||||  ||||||||| |||| | |||||| ||||||||      ||||||  || ||||| |||||||| | | ||||||     
T  19005028 tcgctctcacccagctaaactgaccaaaatactcctgcactagttaactaacgcaagtgtaaatcaaacttgacttaattttacacatgcgtgacttaaa 19004929  T
Q  191 ttacgtcgcatgagttaactca 212  Q
    | ||| ||||||||||||||||    
T  19004928 tcacgccgcatgagttaactca 19004907  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 35049544 - 35049600
Alignment:
Q  154 tcaaacgagatttaatattacacatacattacttaagttacgtcgcatgagttaact 210  Q
    ||||||| |||||||| ||||||||||   |||||||||| | ||||||||||||||    
T  35049544 tcaaacgtgatttaattttacacatacgcgacttaagttatgccgcatgagttaact 35049600  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 42807477 - 42807521
Alignment:
Q  171 ttacacatacattacttaagttacgtcgcatgagttaactcacgc 215  Q
    |||||||||| | |||||||| ||| |||||||||||||||||||    
T  42807477 ttacacatacgtgacttaagtcacgccgcatgagttaactcacgc 42807521  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 31778822 - 31778884
Alignment:
Q  154 tcaaacgagatttaatattacacatacattacttaagttacgtcgcatgagttaactcacgct 216  Q
    ||||||| || ||||| |||||||| | | |||||||| ||| ||||||||||||||||||||    
T  31778822 tcaaacgtgacttaattttacacatgcgtgacttaagtcacgccgcatgagttaactcacgct 31778884  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 27982477 - 27982557
Alignment:
Q  74 ttctgctcttatctcggcatgtctcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt 154  Q
    |||||||||| || | ||| || ||||||||| ||||  |||||||| ||||||||||||  || |||||| |||||||||    
T  27982477 ttctgctcttctcccagcaagtttcgctcccatccagtcaaactgatcaaaatactcatgagttagttaactaacgcaagt 27982557  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 53831412 - 53831358
Alignment:
Q  162 gatttaatattacacatacattacttaagttacgtcgcatgagttaactcacgct 216  Q
    |||||||| ||| |||| ||| |||||||| |||| |||||||||||||||||||    
T  53831412 gatttaattttatacatgcatgacttaagtcacgttgcatgagttaactcacgct 53831358  T

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