View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_32 (Length: 326)

Name: NF5492_high_32
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_32
NF5492_high_32
[»] chr3 (2 HSPs)
chr3 (19-253)||(27021077-27021311)
chr3 (250-307)||(34591049-34591106)
[»] chr4 (2 HSPs)
chr4 (250-300)||(47560714-47560764)
chr4 (250-307)||(32692912-32692969)
[»] chr8 (1 HSPs)
chr8 (250-302)||(25881494-25881546)
[»] chr2 (1 HSPs)
chr2 (250-302)||(3882705-3882757)
[»] chr1 (1 HSPs)
chr1 (266-302)||(2568958-2568994)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 27021077 - 27021311
Alignment:
Q  19 cctcaaagccccaaaagtgactaccagttcgaccaaaacctgattgaacctcatcagctataaagagacctcctgcttttttgatgatgctataaactgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||    
T  27021077 cctcaaagccccaaaagtgactaccagttcgaccaaaacctgactgaacctcatcggctataaagacacctcctgcctttttgatgatgctataaactgc 27021176  T
Q  119 aggcaagtaacctggagccaattctatcactccacctactccctgtgtcatgcaccaacctttcactgaacaatatgaacccctttacaagtttatgaga 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||| || |||||||||||||||||||  ||||||||    
T  27021177 aggcaagtaacctggagccaattctatcactccacccactccctgtgtcaagcacgaaccgttcactaaataatatgaacccctttacaaaattatgaga 27021276  T
Q  219 gtgagaaagtaccattatgtttatttctatgttac 253  Q
    |||||||||||||||||||||||||||||||||||    
T  27021277 gtgagaaagtaccattatgtttatttctatgttac 27021311  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 34591106 - 34591049
Alignment:
Q  250 ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttcccgaatt 307  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||| |||||||| ||||    
T  34591106 ttactattaatggtccttaaagagtgttccagagacactcgttaacatttccctaatt 34591049  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 47560714 - 47560764
Alignment:
Q  250 ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttc 300  Q
    |||||| |||||||| |||||||||||| ||||||||||||||| ||||||    
T  47560714 ttactatttatggtccttaaagagtgtctcagaggcactcgttaacatttc 47560764  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 32692969 - 32692912
Alignment:
Q  250 ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttcccgaatt 307  Q
    |||||| | |||||| |||||||||||||| ||||||||||||| |||||||| ||||    
T  32692969 ttactattaatggtccttaaagagtgtcccggaggcactcgttaacatttccctaatt 32692912  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 25881546 - 25881494
Alignment:
Q  250 ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttccc 302  Q
    ||||||||||||||| ||||| ||||| |||| ||||||||||| ||||||||    
T  25881546 ttactacttatggtccttaaacagtgttccaggggcactcgttaacatttccc 25881494  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 3882705 - 3882757
Alignment:
Q  250 ttactacttatggtcattaaagagtgtcccagaggcactcgttagcatttccc 302  Q
    ||||||||||||||  |||||||||||||| | ||||||||||| ||||||||    
T  3882705 ttactacttatggttcttaaagagtgtcccgggggcactcgttaacatttccc 3882757  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 2568958 - 2568994
Alignment:
Q  266 ttaaagagtgtcccagaggcactcgttagcatttccc 302  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  2568958 ttaaagagtgtcccggaggcactcgttaacatttccc 2568994  T

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