View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_36 (Length: 310)
Name: NF5492_high_36
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 37358878 - 37358595
Alignment:
| Q |
10 |
ataattctcaattgccatccactgaaatttaagaaaaaccacattaaatcaattgccttctttatgcttgtacaaaattagtgtgtaaaaaggtacaca- |
108 |
Q |
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| T |
37358878 |
ataatcctcaattgccatccactgaaatttaagaaaaaccacattaaatcaattgccttctttatgcttgtacaaa-ttagtgtataaaaaggtacacaa |
37358780 |
T |
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| Q |
109 |
tttttagaatatgtgacatgttaatatatgttacattattttctcgaaatatgtaaaactatactaatggacatatacctgagctgcctcaatctctgaa |
208 |
Q |
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| T |
37358779 |
tttttagaatatgtgacatgttaatatatgttacattattttctagaaatatgtaaaactatcctaatggacatatacctgagctgcctcaatctctgaa |
37358680 |
T |
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| Q |
209 |
acctggctctgaatgttaaatgaatgaggtttcaacatgcatacaaatagtatctctgatttttggaagaaacatttatgtcttt |
293 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37358679 |
acttggctctgaatgttaaatgaacgaggtttcaacatgcatacaaatagtatctctgatttttggaagaaacatttatgtcttt |
37358595 |
T |
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