View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_41 (Length: 290)
Name: NF5492_high_41
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 34144003 - 34144277
Alignment:
| Q |
1 |
acttataaaaattcaacagaataaagaatagccatggaatttttgtctgtattgaatagtaccctctagcgttattgttttaaagaacccaatacaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144003 |
acttataaaaattcaacagaataaagaatagccatggaatttttgtctgtattgaatagtaccctctagcgttattgttttaaagaacccaatacaaagt |
34144102 |
T |
|
| Q |
101 |
attaatataaaaacattgctttgttgttttgattatctatatatacataaacaaatgaactttgctttataagcagccattctctgaaaaaacatgcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144103 |
attaatataaaaacattgctttgttgttttgattatctatatatacataaacaaatgaactttgctttataagcagccattctctgaaaaaacatgcctt |
34144202 |
T |
|
| Q |
201 |
agacaaatccctgcttgaaattgtacgagtcattcactaaggtttgactcttatcattggaaactccaagatctg |
275 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144203 |
agacaaatccctgcttgaaattgtacgagtctttcactaaggtttgactcttatcattggaaactccaagatctg |
34144277 |
T |
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