View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_42 (Length: 289)
Name: NF5492_high_42
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 26380149 - 26380410
Alignment:
| Q |
10 |
attatacttgatttcctacttcattttcataattatacacaaaatgtttagaaactattttatccatccaaacataaaagattaatttaaaaacatacnn |
109 |
Q |
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| T |
26380149 |
attatacttgatttcctacttcattttcataattatacacaaaatgtttagaaactattttatccatccaaacataaaagattaatttaaaaacatactt |
26380248 |
T |
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| Q |
110 |
nnnnngtactaaaaattcaaatacacttcatacttatctatttttcaataaagaatatgttaatataagtgaaaataactattgaaaattgtaaaactag |
209 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380249 |
tttttgtactaaaaattcaaatacacttcatacgtatct--ttttcaataaagaatgtgttaatataagtgaaaataactattgaaaattgtaaaactag |
26380346 |
T |
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| Q |
210 |
tgtatcttacttagattcattgtgtgtttacttaattcgattaattcgatgaaatagtgttttt |
273 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
26380347 |
tgtatcttacttagattcattgtgtgtttactgaattcgtttaattcgatgaaatagtgttttt |
26380410 |
T |
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