View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_44 (Length: 281)
Name: NF5492_high_44
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 34260333 - 34260588
Alignment:
| Q |
10 |
aagaatatgtggaagtttaactgcaatcttttcacaattttgatggccaaagttgaacaaatttaacattgttacttatcaatctcgttaagattaggga |
109 |
Q |
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| T |
34260333 |
aagaatatgtggaagtttaactgcaatcttttcacaattttgatggccaaagttgaataaatttaacattgttacttatcaatctcgttaagattaggga |
34260432 |
T |
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| Q |
110 |
tggagtggactatcaataaattatgtagtttcattttggccaagagttgtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaag |
209 |
Q |
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| T |
34260433 |
tggagtggactatcaataaattatgtagtttcattttggccaagagttgtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaag |
34260532 |
T |
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| Q |
210 |
gccatctccctatttgagaatgttgttcgtcttaatgatgccattgaagatgaagg |
265 |
Q |
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| T |
34260533 |
gccatctccctatttgagaatgttgttcgtcttaatgatgccattgaagatgaagg |
34260588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 53 - 265
Target Start/End: Original strand, 34250440 - 34250650
Alignment:
| Q |
53 |
tggccaaagttgaacaaatttaacattgttacttatcaatctcgttaagattagggatggagtggactatcaataaattatgtagtttcattttggccaa |
152 |
Q |
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| T |
34250440 |
tggcaaaagttgaacaaattttatactgttacttttcaatgtcattaagataggggatggagtggactatcaataaatcatgcagtttcattttggccaa |
34250539 |
T |
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| Q |
153 |
gagttgtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgcca |
252 |
Q |
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| T |
34250540 |
gatttataataattcatat--atgatttgaatgcaacaggctgaagagaacgcaaaggccatctccctatttgaaaatgttgttcgtcttaatgatgcta |
34250637 |
T |
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| Q |
253 |
ttgaagatgaagg |
265 |
Q |
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| T |
34250638 |
ttgaagatgaagg |
34250650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 20867865 - 20867794
Alignment:
| Q |
193 |
atgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgccattgaagatgaag |
264 |
Q |
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| T |
20867865 |
atgaagaaaatgcaaaagccatttccctgtttgagaatgttgttcgtgttaatgatgccattgaagatgaag |
20867794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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