View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_high_47 (Length: 271)
Name: NF5492_high_47
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 20270005 - 20269763
Alignment:
| Q |
11 |
cacagaccacaaaaattgttactgcaacataccttgagccgaaaatttggggataatctttacgtgtaaaaattctccatgttagaatcaaccgtctctt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20270005 |
cacaaaccacaaaaattgttactgcaacataccttaagccgaaagtttggggataatcgttacgtgtaaaatttctccatgttagaatcaaccgtctctt |
20269906 |
T |
|
| Q |
111 |
cagtacattatctcatggaaacagatacactcctgtaaaagagtaaaatgacgaaataatgcttatgaatttaaacattatgctatagacagttttacct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20269905 |
cagtacattatctcatggaaacagatactctcctgtaaaaaattaaaatgacgaaataatgcttatgaatttaaacattatgctatagacagttttacct |
20269806 |
T |
|
| Q |
211 |
tgtgaaaatttccctactctgtccttccttgacaccattttca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20269805 |
tgtgaaaatttccctactctgtccttccttgacagcattttca |
20269763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 20234942 - 20234723
Alignment:
| Q |
11 |
cacagaccacaaaaattgttactgcaacataccttgagccgaaaatttggggataatctttacgtgtaaaaattctccatgttagaatcaaccgtctctt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20234942 |
cacaaaccacaaaaattgttactgcaacataccttaagccgaaagtttggggataatcgttacgtgtaaaatttctccatgttagaatcaaccgtctctt |
20234843 |
T |
|
| Q |
111 |
cagtacattatctcatggaaacagatacactcctgtaaaagagtaaaatgacgaaataatgcttatgaatttaaacattatgctatagacagttttacct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20234842 |
cagtacattatctcatggaaacagatactctcctgtaaaaaattaaaatgacgaaataatgcttatgaatttaaacattatgctatagacagttttacct |
20234743 |
T |
|
| Q |
211 |
tgtgaaaatttccctactct |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20234742 |
tgtgaaaatttccctactct |
20234723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 20258788 - 20258752
Alignment:
| Q |
194 |
tatagacagttttaccttgtgaaaatttccctactct |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20258788 |
tatagacagttttaccttgtgaaaatttccctactct |
20258752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University