View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_high_49 (Length: 260)

Name: NF5492_high_49
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_high_49
NF5492_high_49
[»] chr7 (2 HSPs)
chr7 (11-95)||(43913671-43913756)
chr7 (27-70)||(45218479-45218522)
[»] chr2 (5 HSPs)
chr2 (158-238)||(9290242-9290322)
chr2 (158-238)||(9314675-9314755)
chr2 (179-238)||(7610473-7610532)
chr2 (158-238)||(8575183-8575263)
chr2 (158-238)||(9069819-9069894)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 43913756 - 43913671
Alignment:
Q  11 cacagaacagataaataaaaaccagaaaatcagcagcaaacttcaatgttgctatcaatttcaacccccacct-ccccaaaatata 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43913756 cacacaacagataaataaaaaccagaaaatcagcagcaaacttcaatgttgctatcaatttcaacccccacctcccccaaaatata 43913671  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 45218479 - 45218522
Alignment:
Q  27 aaaaaccagaaaatcagcagcaaacttcaatgttgctatcaatt 70  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    
T  45218479 aaaaaccagaaaatcagtagcaaacttccttgttgctatcaatt 45218522  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 9290242 - 9290322
Alignment:
Q  158 agtctatatgcaagaatagtgaccaatcctatcttcaatttacaaatggcaattgacagtttcattccatcgactataaca 238  Q
    |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  9290242 agtctatatgcaagtacagtgaccaatcctattttcaattttcaaatggcaattgaaagtttcattccatcgactataaca 9290322  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 9314675 - 9314755
Alignment:
Q  158 agtctatatgcaagaatagtgaccaatcctatcttcaatttacaaatggcaattgacagtttcattccatcgactataaca 238  Q
    ||||||||| |||| | ||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||    
T  9314675 agtctatatccaagtacagtgaccgatcctatcttcaattttcacatggcaattgacagtttcattccatcaactataaca 9314755  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 7610473 - 7610532
Alignment:
Q  179 accaatcctatcttcaatttacaaatggcaattgacagtttcattccatcgactataaca 238  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7610473 accaatcctatcttcaactttcaaatggcaattgacagtttcattccatcgactataaca 7610532  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 8575263 - 8575183
Alignment:
Q  158 agtctatatgcaagaatagtgaccaatcctatcttcaatttacaaatggcaattgacagtttcattccatcgactataaca 238  Q
    |||||||||  ||| | |||| ||| ||||| ||||||||| ||||||||||| |||||||||||||||| || |||||||    
T  8575263 agtctatatctaagtacagtgcccattcctaacttcaattttcaaatggcaatagacagtttcattccattgattataaca 8575183  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 9069894 - 9069819
Alignment:
Q  158 agtctatatgcaagaatagtgaccaatcctatcttcaatttacaaatggcaattgacagtttcattccatcgactataaca 238  Q
    ||||||||| ||||  |||||||||||||||||||||| || |||||| ||||||||    |||||||||||||| |||||    
T  9069894 agtctatatccaag--tagtgaccaatcctatcttcaactttcaaatgacaattgac---ctcattccatcgactctaaca 9069819  T

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