View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_6 (Length: 568)
Name: NF5492_high_6
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Complemental strand, 8369574 - 8369035
Alignment:
| Q |
13 |
atcatcatgatagagagttgtttgcaaatgttaacacatattccaattgtagtcttgcttttgaggttttcaatgaaaggggaatatggaacttgatcat |
112 |
Q |
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| T |
8369574 |
atcatcatgatagagagttgtttgcaaatgttaacacatattccaattgtagtcttgcttttgaggttttcaatgaaaggggaataaggaacttgatcat |
8369475 |
T |
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| Q |
113 |
ttgcaaatcaatgactgtgggtttcaatttaaaggcacagaataagagtgttttaaatggaaagagcagcaaaaaggaaaactgtgtcaacacttttgga |
212 |
Q |
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| T |
8369474 |
ttgcaaatcaatgactgtgggtttcaatttaaaggcacagaataagagtgttttaaatggaaagagcagcaaaaaggaaaactgtgtcaacacttttgga |
8369375 |
T |
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| Q |
213 |
aaccccggcccctaactcttaatacatccattgtcattaaagcaaaatcactttatactttgtataataacaaacaacgaggaagaaataaatagaattc |
312 |
Q |
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| T |
8369374 |
aaccccggcccctaactcttaatacatccattgtcattaaagcaaaatcactttatactttgtataataacaaacaacgaggaagaaataaatagaattc |
8369275 |
T |
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| Q |
313 |
aatcaactcgtgaaattcgggttgtatacattacaatgtaactcagccttacattccgtatgatttgtaagtcaggacaacagccgccgccacaacagaa |
412 |
Q |
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| T |
8369274 |
aatcaactcgtgaaattcgggttgtatacattacaatgtaactcagccttacattccgtatgatttgtaagtcaggacaacagccgccgccacaacagaa |
8369175 |
T |
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| Q |
413 |
actgctgccacgcctccaagcacaccaacagctccatgcgattctccttccattttcgcaacatatgactccatttggcctgtgcaataatttcataaat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8369174 |
actgctgccacgcctccaagcacaccaacagctccatgagattctccttccattttcgcaacatatgactccatttggcctgtgcaataatttcataaat |
8369075 |
T |
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| Q |
513 |
ttaagtattttccccattataagaaaagcgaccaaaatgg |
552 |
Q |
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| T |
8369074 |
ttaagtattttccccattataagaaaagcgaccaaaatgg |
8369035 |
T |
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