View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_high_61 (Length: 241)
Name: NF5492_high_61
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24065830 - 24065608
Alignment:
| Q |
1 |
ttctaaaatggacaatcacttattaaaataatacactgtattgtgtagaccaatgttagctggttctcatgtgatggattgtgcaccttgttgtggccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24065830 |
ttctaaaatggacaatcacttattaaaataatacactgtattgtgtagaccaatgttagctggttctcatgtgatggattgtgcaccttgttgtggccgt |
24065731 |
T |
|
| Q |
101 |
tagaatcttcaaaatatatattaaagtcacaaagactgtgtcaaatttgattaaaatttaagatgctcttcattattcagcagaatgcacatggttaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24065730 |
tagaatcttcaaaatatatattaaagtcacaaagactgtgtcaaatttgattaaaatttaagatgctcttcattattcagcagaatgcacatggttaaat |
24065631 |
T |
|
| Q |
201 |
gaatcaaatttgacactaatcag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24065630 |
gaatcaaatttgacactaatcag |
24065608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University