View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_69 (Length: 215)
Name: NF5492_high_69
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 38766171 - 38765984
Alignment:
| Q |
11 |
cgaagaaaatattcttcaatacaacgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatctacacgaagtaaaatatgt |
110 |
Q |
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| T |
38766171 |
cgaaaaaaatattcttcaatacaacgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatctacacgaagtaaaatatgt |
38766072 |
T |
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| Q |
111 |
gttacattacatataattaatttcagcttatgaattaattaaagaagattaaggataccaccttgtcctcaaattgttccatgaaaag |
198 |
Q |
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| T |
38766071 |
gttacattacatataattaatttcagcttatgaattaattaaagaagattaaggataccaccttgtcctcaaattgttccatgaaaag |
38765984 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 44997511 - 44997569
Alignment:
| Q |
35 |
cgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatcta |
93 |
Q |
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| T |
44997511 |
cgatcaaggatatgagccaaaggaaggaaagataaatacacatcttcaacagtcatcta |
44997569 |
T |
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