View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_high_8 (Length: 521)
Name: NF5492_high_8
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 105 - 507
Target Start/End: Complemental strand, 24284619 - 24284218
Alignment:
| Q |
105 |
agaggatgcctcttgcttgctgatttcgacagattcttcaacaatagcaccaatgtttgtgatttcaagcttttgaagtagtgatataactgttccaaaa |
204 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24284619 |
agagtatgcctcttgcttgctgatttcaacagattcttcaacaatagcaccaatgtttgtgatttcaagcttttgaagtagtggtataactgttccaaaa |
24284520 |
T |
|
| Q |
205 |
acattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactcaaaaattcttttggtgggaatatta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
24284519 |
acattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctagactcaaaaattcttttggtgggaacatta |
24284420 |
T |
|
| Q |
305 |
ctaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatcccagttctcgcacacgaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24284419 |
ctaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttg-tttctaacacaatcccagttctcgcacacgaa |
24284321 |
T |
|
| Q |
405 |
gtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcaggtattt |
504 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24284320 |
gtgctgcaaaggttctgtgtcgtctatattcagctggagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcaggtattt |
24284221 |
T |
|
| Q |
505 |
gtg |
507 |
Q |
| |
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||| |
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| T |
24284220 |
gtg |
24284218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 165 - 497
Target Start/End: Complemental strand, 21200048 - 21199710
Alignment:
| Q |
165 |
gatttcaagcttttgaagtagtgatataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaag |
264 |
Q |
| |
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|||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||| || ||||| ||||||| || ||||||||| |||| |
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| T |
21200048 |
gatttccagcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaa |
21199949 |
T |
|
| Q |
265 |
ccatttcctaaactcaaaaattctttt------ggtgggaatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaac |
358 |
Q |
| |
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|| ||||||| |||||| |||| | ||||| ||| |||| |||||||||| |||||||||||||| ||||||||||||| | ||||||| |
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| T |
21199948 |
ccgcttcctaagctcaaactttctggttgctgcggtggagataatactttgttcattactcttccacaactgcacatttgattcctaaataagctcaaaa |
21199849 |
T |
|
| Q |
359 |
gggctccactttgctttctaacacaatcccagttctcgcacacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagc |
458 |
Q |
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|| || |||| ||||||| |||||||||| | | | || | | ||||||||| ||||||||||||||| ||||||||||| | ||| ||||||||||| |
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| T |
21199848 |
ggttcccgctttcctttctaccacaatcccaatccccacagatgtagtgctgcataggttctgtgtcgtcgatattcagtttcatcttctgacaataagc |
21199749 |
T |
|
| Q |
459 |
ttccatagagcttcttggctgcagcagcatttccttgca |
497 |
Q |
| |
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|||||| || | ||||||| || |||||||||||||| |
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| T |
21199748 |
ttccatggaattccttggctcgagtagcatttccttgca |
21199710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 198 - 497
Target Start/End: Original strand, 24232214 - 24232507
Alignment:
| Q |
198 |
tccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactcaaaaattcttttggtggg |
297 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||| ||||| || || ||||||| |||| |||||| ||| | | ||||| |||| ||| |
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| T |
24232214 |
tccaaaaacattaggcataacacaaagatcatcagaaatgataaaagtagcattttccttcacaaaaccattttctatattgaaaaa--cttt----ggg |
24232307 |
T |
|
| Q |
298 |
aatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatcccagttctcgc |
397 |
Q |
| |
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|||| | || |||||||||||| |||||| ||| ||||| |||||||||| ||||||| || ||||| |||||| ||||||||||||||||| |
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| T |
24232308 |
aatacttctctgttcattactttcccacaatagcatttttggttcctaaaaaagctcaaaaggcagccactaacctttcttctacaatcccagttctcgc |
24232407 |
T |
|
| Q |
398 |
acacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgca |
497 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||||||||||||| |||| | | || ||| ||||||| ||| ||||||| ||||| |||||||||||||| |
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| T |
24232408 |
acacaaagtactgcaagcgttcagtgtcgtctatattcagtttcagctgtcggcagtaatcttccatcgagtttcttggttgcagtagcatttccttgca |
24232507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 497
Target Start/End: Complemental strand, 21194794 - 21194457
Alignment:
| Q |
166 |
atttcaagcttttgaagtagtgatataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagc |
265 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |||||| || ||||| ||||||| || ||||||||| ||| | |
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| T |
21194794 |
atttctagcttttgaagtagttgtataactgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttccttaacaagcc |
21194695 |
T |
|
| Q |
266 |
catttcctaaactcaaaaattctttt------ggtgggaatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacg |
359 |
Q |
| |
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| ||||||| |||| | ||| | ||||| | | |||| || ||||||| |||||||||||| ||||||||||||| ||||||||| | |
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| T |
21194694 |
cgcttcctaatctcagactttccagttgaggcggtggagaaaatactttgtccattactcgaccacaactgcacatttgattcctaaatatgctcaaaag |
21194595 |
T |
|
| Q |
360 |
ggctccactttgctttctaacacaatcccagttctcgcacacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagct |
459 |
Q |
| |
|
| || || | |||||||||||||||||||||| | || | |||||| | || |||||||||||||| ||||||||||| | ||| ||||||||| | |
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| T |
21194594 |
gttccctctctcctttctaacacaatcccagttcccacagatgaagtgtttcatgggttctgtgtcgtcgatattcagtttcatcttctgacaataactt |
21194495 |
T |
|
| Q |
460 |
tccatagagcttcttggctgcagcagcatttccttgca |
497 |
Q |
| |
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||||| || |||||||| || |||||||||||||| |
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| T |
21194494 |
tccatggaatttcttggcctaagtagcatttccttgca |
21194457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 502
Target Start/End: Original strand, 3494735 - 3494816
Alignment:
| Q |
421 |
gtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcaggtat |
502 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||| ||| |||| || | || |||||||| ||||| |||| |
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|
| T |
3494735 |
gtgtcgtctatattcagtttgagcttctggcaataatcttccatcgagtttctaggattgagtagcatttctttgcaagtat |
3494816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 24161089 - 24161177
Alignment:
| Q |
417 |
ttctgtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcaggtatttg |
505 |
Q |
| |
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|||||| ||||| ||||||| ||| | |||||| |||||||||||||||||| |||| || | || ||||||| | |||||||||||| |
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| T |
24161089 |
ttctgtttcgtcaatattcaatttcatcttttggcaataagcttccatagagtttctgggattgagtagcattttcctgcaggtatttg |
24161177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 503
Target Start/End: Original strand, 24121935 - 24122018
Alignment:
| Q |
420 |
tgtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcaggtatt |
503 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||| || ||||| ||| |||| || | || |||||||| ||||||||||| |
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|
| T |
24121935 |
tgtgtcatcaatattcagtttgagctgttgacaatacgcctccattgagtttctagggttgagtagcatttctttgcaggtatt |
24122018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 24154162 - 24154223
Alignment:
| Q |
403 |
aagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagcttccat |
464 |
Q |
| |
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|||| |||||| |||||||| ||||| || ||||||||||| | ||||||||||||||||| |
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|
| T |
24154162 |
aagtactgcaagggttctgtttcgtcgatgttcagtttgagttgatgacaataagcttccat |
24154223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 500
Target Start/End: Complemental strand, 10989123 - 10989023
Alignment:
| Q |
400 |
acgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataagcttccatagagcttcttggctgcagcagcatttccttgcagg |
499 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||| || ||||||| |||| ||||| ||||||||| ||| ||||||| ||||||| |
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| T |
10989123 |
acgaagtgctgcaatggttctgtgtcgtctatattgagattgagcttctggcaataagtttccgtagagtttcttggcttcagtagcatttttttgcagg |
10989024 |
T |
|
| Q |
500 |
t |
500 |
Q |
| |
|
| |
|
|
| T |
10989023 |
t |
10989023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 3151567 - 3151479
Alignment:
| Q |
192 |
aactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactca |
280 |
Q |
| |
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||||||| | |||||||||||||||||| |||||| || ||||| ||||| || || ||||| | | ||||||||||||||||||||| |
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| T |
3151567 |
aactgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactca |
3151479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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