View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_1 (Length: 715)
Name: NF5492_low_1
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 25 - 703
Target Start/End: Complemental strand, 12846307 - 12845629
Alignment:
| Q |
25 |
ttgttcagtttaaagggtttgacttgtcttgatttgtccttttcgtgtgtcgaggataaactcttgttctctcttgcagaggaatgtcttcctttgagga |
124 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| || ||||||| | | |||||| ||||| |||||||| |||||| || | ||||||||||||| |
|
|
| T |
12846307 |
ttgttcagtttgaagggtttgacttatcttgatttctcgttttcgtataccccggataagctcttcttctctctcgcagagaaaggacttcctttgagga |
12846208 |
T |
|
| Q |
125 |
ggcttggcttccaatgttgttttggttatagttatagtggaatctaccgtttgttatctaagtgtcaatctcttcaacatttgaatcttcaaaaggccaa |
224 |
Q |
| |
|
| |||| || || ||| |||||||||||||||| |||||||| || |||||||| |||||||||| | |||||||| |||||||| | | | |
|
|
| T |
12846207 |
gtcttgttctcaaagattgctttggttatagttatactggaatctttcgcttgttatccaagtgtcaattattacaacatttagatcttcaactgactga |
12846108 |
T |
|
| Q |
225 |
ctttttgtatgaccaacattttgctaggttgtctttgttccttgctgatttgatttctataaacgttagtttttgtagcaatctcacggaatcaacattg |
324 |
Q |
| |
|
|||||| |||| |||||| |||||| ||| |||||| | |||| |||||||||||||||||||||||||||||||| | || || ||| |||| ||| |
|
|
| T |
12846107 |
gtttttgaatgatcaacatgttgctaagttatctttgcttcttggtgatttgatttctataaacgttagtttttgtaagcagctaacagaaacaactttg |
12846008 |
T |
|
| Q |
325 |
tttgcatttgctaaaaactgtcctttactcgccgatatcaacatggaggaaactagtattgggaaaat-gattgtggagaatccgaattcttcgatggat |
423 |
Q |
| |
|
|||| | | ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||| ||||||||| ||||||||||||||| |
|
|
| T |
12846007 |
tttgagctagttaaaaactgtcctttactcgctgatatcaatatggaggagactagtattgggaaaacaggttg-ggagaatccaaattcttcgatggat |
12845909 |
T |
|
| Q |
424 |
tttgttgtaagccctcaagtgaactctcttcatttgaagggcaatgcatggttggcggatgaaagcatccaaatatttgctacctttttcccaaatttgg |
523 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||| || ||| ||||| || ||||||| |
|
|
| T |
12845908 |
ttggttgtaagccctcgagtgaagtctcttcgtttgaagggcaatgcatggttgagggacaaaagcatccaaatgttcgctgatttttttccgaatttgg |
12845809 |
T |
|
| Q |
524 |
agcttcttgatttgagctcttgttattgtatatttgaaggtgttggtgaagttttgaggagatgttgtaatattaaacatttaagcttggcctcctcttt |
623 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| | ||| |||| |||||| || || |||||||| || |
|
|
| T |
12845808 |
agctacttgatttgagctcttgttattgcgtatttgttggtgttggtgaagttttaaggagaagcgataagattagacatttgagtttagcctcctcctt |
12845709 |
T |
|
| Q |
624 |
cggcgctaagctatttgaaatgaactttgtagttcccaaattggaggtattgaacttgtctcgatccgcaactgatgatg |
703 |
Q |
| |
|
||| || |||||| |||| |||||| ||| |||||||||||| ||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
12845708 |
cggagccaagctacttgagatgaaccttgaagttcccaaattagaggtattgaacttgtcccggtccgcgaccgatgatg |
12845629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 683
Target Start/End: Complemental strand, 32267574 - 32267531
Alignment:
| Q |
640 |
gaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32267574 |
gaaatgaactttgaagttcccaaattggaggtattgaacttgtc |
32267531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 680
Target Start/End: Original strand, 41889545 - 41889594
Alignment:
| Q |
631 |
aagctatttgaaatgaactttgtagttcccaaattggaggtattgaactt |
680 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41889545 |
aagctacttgaaatgaactttaaagttcccaaattggaggtgttgaactt |
41889594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 38266942 - 38266976
Alignment:
| Q |
30 |
cagtttaaagggtttgacttgtcttgatttgtcct |
64 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38266942 |
cagtttaaaggctttgacttgtcttgatttgtcct |
38266976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 683
Target Start/End: Complemental strand, 27922607 - 27922564
Alignment:
| Q |
640 |
gaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
27922607 |
gaaatgaactttgaagttcccaaattggaggtgttgaacttgtc |
27922564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 683
Target Start/End: Original strand, 17636403 - 17636444
Alignment:
| Q |
642 |
aatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17636403 |
aatgaactttgaagttcccaaattggaggtgttgaacttgtc |
17636444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 683
Target Start/End: Complemental strand, 7307958 - 7307916
Alignment:
| Q |
641 |
aaatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7307958 |
aaatgaactttaaagttcccaaattggaggtattgaacttgtc |
7307916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 683
Target Start/End: Complemental strand, 547018 - 546969
Alignment:
| Q |
634 |
ctatttgaaatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
547018 |
ctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtc |
546969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 683
Target Start/End: Original strand, 51120895 - 51120936
Alignment:
| Q |
642 |
aatgaactttgtagttcccaaattggaggtattgaacttgtc |
683 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
51120895 |
aatgaactttgaagttctcaaattggaggtgttgaacttgtc |
51120936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 598
Target Start/End: Original strand, 51764281 - 51764398
Alignment:
| Q |
481 |
gatgaaagcatccaaatatttgctacctttttcccaaatttggagcttcttgatttgagctcttgttattgtatatttgaaggtgttggtgaagttttga |
580 |
Q |
| |
|
|||||||||||| ||| |||||| || ||||||| |||||| |||| |||||||| | ||||| || | |||| | ||||||| |||||||||| | |
|
|
| T |
51764281 |
gatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaa |
51764380 |
T |
|
| Q |
581 |
ggagatgttgtaatatta |
598 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
51764381 |
ggagatgttctaagatta |
51764398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University