View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_low_11 (Length: 474)

Name: NF5492_low_11
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_low_11
NF5492_low_11
[»] chr6 (26 HSPs)
chr6 (324-461)||(26964088-26964225)
chr6 (171-303)||(31290833-31290965)
chr6 (324-461)||(26650847-26650984)
chr6 (324-461)||(26756815-26756952)
chr6 (102-246)||(26629201-26629346)
chr6 (102-246)||(26735177-26735322)
chr6 (175-281)||(26963980-26964086)
chr6 (175-281)||(26650739-26650845)
chr6 (175-281)||(26756707-26756813)
chr6 (235-304)||(27652757-27652826)
chr6 (282-338)||(27422832-27422888)
chr6 (395-442)||(26965931-26965978)
chr6 (389-436)||(27652664-27652711)
chr6 (389-442)||(26640358-26640411)
chr6 (389-442)||(26746324-26746377)
chr6 (245-304)||(26640274-26640331)
chr6 (245-304)||(26746240-26746297)
chr6 (316-355)||(26629362-26629401)
chr6 (316-355)||(26735338-26735377)
chr6 (262-304)||(27506761-27506803)
chr6 (183-227)||(26964723-26964767)
chr6 (346-429)||(28783611-28783694)
chr6 (309-406)||(27606872-27606969)
chr6 (389-461)||(26629415-26629487)
chr6 (389-461)||(26735391-26735463)
chr6 (102-162)||(27422971-27423031)
[»] scaffold0003 (2 HSPs)
scaffold0003 (282-338)||(64475-64531)
scaffold0003 (102-162)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (254-305)||(18719305-18719354)
chr4 (254-304)||(18674703-18674751)
chr4 (254-301)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26964088 - 26964225
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||||| |  |||||||||||||||||||| |||||||||| ||||    
T  26964088 tttatctgctactccttatattttttcttccatttctttgtgaagtcttacaatctggtaatccgtttctctttaatgtatctcgtgaattaacacttcc 26964187  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  26964188 tttattcatatgacttataaatcttttaaaatgaattt 26964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 31290833 - 31290965
Alignment:
Q  171 tgttgtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgt 270  Q
    |||||||| || |||||||||||||||||  ||||||||||||| | ||| |||||| ||||| ||||| |||||||||||  |||||||||||||||||    
T  31290833 tgttgtgggaacatttatatgtatgaactagatggtataaagaagcttttttcctatcaaattttgttttgatttggcaaatggaagtggagaatttcgt 31290932  T
Q  271 ttcataactcaaagttttggttttgtacttcca 303  Q
    |||||||||||||||||||||||||||||||||    
T  31290933 ttcataactcaaagttttggttttgtacttcca 31290965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26650847 - 26650984
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26650847 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26650946  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||||||||||||||| |||| | |||| ||||||||    
T  26650947 tttattcatatgacttaaaaatattttaaaatgaattt 26650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 461
Target Start/End: Original strand, 26756815 - 26756952
Alignment:
Q  324 tttatctgctactccatatattttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcc 423  Q
    ||||||| ||||||| ||||||||||||||| | || || |||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  26756815 tttatcttctactccttatattttttcttccttatctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcc 26756914  T
Q  424 tttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||||||||||||||| |||| | |||| ||||||||    
T  26756915 tttattcatatgacttaaaaatattttaaaatgaattt 26756952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 26629201 - 26629346
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 201  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26629201 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26629300  T
Q  202 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 246  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26629301 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 26735177 - 26735322
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaagaagtatttgttgtggaaaaatttatatgtatgaacttt 201  Q
    ||||||| |||||||| ||||||| | ||||||||| |||| ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||     
T  26735177 atacaaatttcatcttatatcacactgaaatagataattcaaagaattaaaaattgcaaaaaaaatatatgttttggaaacatttatatgtatgaacttg 26735276  T
Q  202 atggtataaagaa-acctttctcctattaaattatgtttcgatttg 246  Q
    |||||||||||||  ||||| |||||| ||||| | ||| ||||||    
T  26735277 atggtataaagaaggcctttttcctatcaaattttcttttgatttg 26735322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26963980 - 26964086
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  ||||||||||||||||| |||||||| | || ||||| |||||| ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26963980 gtggaaacgtttatatgtatgaacttgatggtatacaaaagcctttttcctatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26964079  T
Q  275 taactca 281  Q
    |||||||    
T  26964080 taactca 26964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26650739 - 26650845
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26650739 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26650838  T
Q  275 taactca 281  Q
    |||||||    
T  26650839 taactca 26650845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26756707 - 26756813
Alignment:
Q  175 gtggaaaaatttatatgtatgaactttatggtataaagaaacctttctcctattaaattatgtttcgatttggcaaaacgaagtggagaatttcgtttca 274  Q
    |||||||  |||||||||||||| || |||||||| |||| ||||| ||| || ||||| |||||||| || |||||  ||||||||||||||| |||||    
T  26756707 gtggaaacgtttatatgtatgaaattgatggtatacagaagcctttttccaatcaaattttgtttcgaatttgcaaatggaagtggagaatttcctttca 26756806  T
Q  275 taactca 281  Q
    |||||||    
T  26756807 taactca 26756813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 27652826 - 27652757
Alignment:
Q  235 tgtttcgatttggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  27652826 tgttttgatctggcaaatggaagtggagaatttcgtttcataactcaaaattttggttttatgcttccaa 27652757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 27422888 - 27422832
Alignment:
Q  282 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 338  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  27422888 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 27422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 26965931 - 26965978
Alignment:
Q  395 tttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  26965931 tttaatgtatctcatgaattaatatttcctttatacatatgacttata 26965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 27652711 - 27652664
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatga 436  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27652711 tttctctttaatgtatctcatgaattaatatttactttattcatatga 27652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 26640358 - 26640411
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26640358 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26640411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 26746324 - 26746377
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttata 442  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||    
T  26746324 tttctctttattgtatctcatgaattaacatttccttcattcgtatgacatata 26746377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 26640274 - 26640331
Alignment:
Q  245 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 26746240 - 26746297
Alignment:
Q  245 tggcaaaacgaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtacttccaa 26746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 26629362 - 26629401
Alignment:
Q  316 aatttacttttatctgctactccatatattttttcttcca 355  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26629362 aatttccttttatctgctactccatatattttttcttcca 26629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 26735338 - 26735377
Alignment:
Q  316 aatttacttttatctgctactccatatattttttcttcca 355  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26735338 aatttccttttatctgctactccatatattttttcttcca 26735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27506803 - 27506761
Alignment:
Q  262 gaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  27506803 gaatatcgtttcatagctcaaagttttggttttgtacttccaa 27506761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 26964723 - 26964767
Alignment:
Q  183 atttatatgtatgaactttatggtataaagaaacctttctcctat 227  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  26964723 atttatatgtatgaacttgatggtataaagaagcctttttcctat 26964767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 28783611 - 28783694
Alignment:
Q  346 ttttcttccatttcattttgaagtcttacaaattggtactttgtttctctttaatgtatctcatgaattaacatttcctttatt 429  Q
    |||||||||||||| ||| ||| ||| |||||| ||| |    ||||||||||||||||||||||  |||| ||||||||||||    
T  28783611 ttttcttccatttcttttggaattctgacaaatcggttcaacatttctctttaatgtatctcatggtttaatatttcctttatt 28783694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 27606969 - 27606872
Alignment:
Q  309 aaaaattaatttacttttatctgctactccatatattttttcttccatttcattttgaagt-cttacaaattggtactttgtttctctttaatgtatct 406  Q
    |||||||||| ||||||||||| |||||   ||| |||||||||| |||| ||||| |||| ||||||||||||| |    ||||||||||||||||||    
T  27606969 aaaaattaatatacttttatctcctacttgttatcttttttcttctattt-atttttaagttcttacaaattggttcgacatttctctttaatgtatct 27606872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 26629415 - 26629487
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| ||||||||    
T  26629415 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaattt 26629487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 26735391 - 26735463
Alignment:
Q  389 tttctctttaatgtatctcatgaattaacatttcctttattcatatgacttataaatctcttaagatgaattt 461  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||  ||||| || ||||||  |||| ||||||||    
T  26735391 tttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaattt 26735463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 27423031 - 27422971
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 162  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  27423031 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 27422971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 64475 - 64531
Alignment:
Q  282 aagttttggttttgtacttccaatagaaaaaattaatttacttttatctgctactcc 338  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  64475 aagttttggttttgtacttacaataggaaaaattaatttacttcgatctgctactcc 64531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 64332 - 64392
Alignment:
Q  102 atacaaacttcatcttctatcacagtcaaatagatacttcagagaattacaaattgcaaaa 162  Q
    |||||||||||||||| ||||||||| ||||||||| || |  | |||| |||||||||||    
T  64332 atacaaacttcatcttatatcacagttaaatagatagtttaagggattaaaaattgcaaaa 64392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 18719354 - 18719305
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaat 305  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18719354 gaagtggagaatttcgtttcataagtc--agttttggttttgtacttccaat 18719305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 18674751 - 18674703
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttccaa 304  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||||||||    
T  18674751 gaagtggagaatttcatttcataaatca--gttttggttttgtacttccaa 18674703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 18692832 - 18692787
Alignment:
Q  254 gaagtggagaatttcgtttcataactcaaagttttggttttgtacttc 301  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||||||    
T  18692832 gaagtggagaatttcatttcataaatc--agttttggttttgtacttc 18692787  T

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