View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_low_12 (Length: 463)

Name: NF5492_low_12
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_low_12
NF5492_low_12
[»] chr6 (27 HSPs)
chr6 (1-406)||(4579107-4579512)
chr6 (1-248)||(4574141-4574388)
chr6 (11-165)||(4560422-4560576)
chr6 (3-191)||(4598061-4598249)
chr6 (3-99)||(4557107-4557203)
chr6 (3-95)||(4570958-4571050)
chr6 (3-86)||(4585631-4585714)
chr6 (4-90)||(4613773-4613859)
chr6 (4-81)||(4480693-4480770)
chr6 (4-92)||(4592220-4592308)
chr6 (3-99)||(4606945-4607041)
chr6 (1-84)||(4563708-4563791)
chr6 (4-81)||(4516321-4516398)
chr6 (5-81)||(4505857-4505933)
chr6 (4-71)||(4504452-4504519)
chr6 (28-78)||(3171744-3171794)
chr6 (7-81)||(4515179-4515253)
chr6 (4-81)||(4492955-4493032)
chr6 (4-81)||(4617022-4617099)
chr6 (1-81)||(4461123-4461203)
chr6 (404-446)||(4579037-4579079)
chr6 (28-81)||(4601789-4601842)
chr6 (5-77)||(4392082-4392154)
chr6 (6-62)||(4490412-4490468)
chr6 (11-78)||(4267228-4267295)
chr6 (1-71)||(4469813-4469883)
chr6 (8-62)||(4568072-4568126)
[»] chr8 (3 HSPs)
chr8 (4-97)||(20863898-20863991)
chr8 (1-99)||(16686319-16686417)
chr8 (4-81)||(1674226-1674303)
[»] chr5 (2 HSPs)
chr5 (4-81)||(28000154-28000231)
chr5 (30-78)||(24103002-24103050)
[»] scaffold0477 (1 HSPs)
scaffold0477 (20-78)||(4757-4815)
[»] chr3 (1 HSPs)
chr3 (3-81)||(1281114-1281192)
[»] chr7 (1 HSPs)
chr7 (28-71)||(3086430-3086473)
[»] scaffold0288 (1 HSPs)
scaffold0288 (4-78)||(3774-3848)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 4579512 - 4579107
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgacttttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  4579512 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagtgacttttg 4579413  T
Q  101 tacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtggatatcaacattttagtcaggaatatcgtaac 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4579412 tacgatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtggatatcaacattttagtcaggaacatcgtaac 4579313  T
Q  201 aatgcattcaacttcatcaagttcattcttcataactaaagatcacattaatattatattcataaacttctcattgcttgtaagcttcttgcttcggaga 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579312 aatgcattcaacttcatcaagttcattcttcgtaactaaagatcacattaatattatattcataaacttctcattgcttgtaagcttcttgcttcggaga 4579213  T
Q  301 ttgatttgaaaggttatatcctataacaataaaagacattcactaatattgagtactactatgcaattatacttgtgattttcaatatcatcaaagaaca 400  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  4579212 ttgatttgaaaggttctatcctataacaataaaagacattcacttatgttgagtactactatgcaattatactattcattttcaatatcatcaaagaaca 4579113  T
Q  401 gcctat 406  Q
    ||||||    
T  4579112 gcctat 4579107  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 4574388 - 4574141
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgacttttg 100  Q
    ||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||     
T  4574388 gtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaagcttaagtcactttta 4574289  T
Q  101 tacaatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtggatatcaacattttagtcaggaatatcgtaac 200  Q
    |||||| | |||||||||||| ||| |||||||||   |||||| |||| ||||||||||||||| || | ||||||| ||||||||| || || ||||     
T  4574288 tacaatatatatagttttgttaggaacaaataattcatattttaggtcttcctatgttcttaagtatgaacatcaacaatttagtcagaaacattgtaat 4574189  T
Q  201 aatgcattcaacttcatcaagttcattcttcataactaaagatcacat 248  Q
     ||||||||   ||||||||||||||||||||||| ||||||||||||    
T  4574188 gatgcattcttgttcatcaagttcattcttcataaataaagatcacat 4574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 4560576 - 4560422
Alignment:
Q  11 acacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgacttttgtacaattttt 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||| | |    
T  4560576 acacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatat 4560477  T
Q  111 atagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagt 165  Q
    ||||||||||| ||| ||||| ||||| |||||| ||||  ||||||||||||||    
T  4560476 atagttttgttaggaacaaatcatttgtattttaggtcttgctatgttcttaagt 4560422  T

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Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 4598249 - 4598061
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgacttttgta 102  Q
    ||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||| | |||||  ||    
T  4598249 ggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaacttaattaactttaata 4598150  T
Q  103 caatttttatagttttgttcggaccaaataatttgcattttatgtctacctatgttcttaagtgtggatatcaacattttagtcaggaa 191  Q
     ||| ||||||||||| || ||| ||||||||||  | ||| |||  |||||| |||| |||||||   ||||||||||||||||||||    
T  4598149 aaatatttatagttttattaggatcaaataatttttactttttgttaacctatattctaaagtgtgagcatcaacattttagtcaggaa 4598061  T

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Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 4557203 - 4557107
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgactttt 99  Q
    ||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  4557203 ggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgactttt 4557107  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 4571050 - 4570958
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgac 95  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| || ||||||||    
T  4571050 ggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacctaagtgac 4570958  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 4585714 - 4585631
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaac 86  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||| ||||||||||    
T  4585714 ggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaac 4585631  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 4613773 - 4613859
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaa 90  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| || |||||| |||| ||||||||||||||||||    
T  4613773 gaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaacttaa 4613859  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4480770 - 4480693
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  4480770 gaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 4592308 - 4592220
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagt 92  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||| |||| |||||||||||||| ||| ||||||||| ||||||    
T  4592308 gaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaatttaagt 4592220  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 4606945 - 4607041
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgactttt 99  Q
    ||||| ||||| |||||| || || | |||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||    
T  4606945 ggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgactttt 4607041  T

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Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4563791 - 4563708
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaa 84  Q
    ||||||||  |||||||| ||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  4563791 gtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatcaa 4563708  T

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Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4516398 - 4516321
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    ||||||||||| ||||| || || ||||||||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  4516398 gaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat 4516321  T

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Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 4505933 - 4505857
Alignment:
Q  5 aggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    ||||||| || |||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||    
T  4505933 aggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 4504452 - 4504519
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgct 71  Q
    ||||||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| || |||||    
T  4504452 gaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgct 4504519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 3171794 - 3171744
Alignment:
Q  28 tgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 78  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  3171794 tgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaa 3171744  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 4515179 - 4515253
Alignment:
Q  7 gaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||||| |||| ||| || | ||||||| |||||||||| |||||||| |||||||||||||| |||||||||    
T  4515179 gaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4493032 - 4492955
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||||||||   |||||| || |||||||||||||||||||| |||||||| ||||| || ||||| |||||||||    
T  4493032 gaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 4617099 - 4617022
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||| |||| ||||| || || |||||||||||||||||| | ||||| |||||||| |||||||| |||||||||    
T  4617099 gaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4461203 - 4461123
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    ||||||||||| || |||||||||||   |||||||| ||||||||| ||||| |||||||| || ||||| |||||||||    
T  4461203 gtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat 4461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 4579079 - 4579037
Alignment:
Q  404 tatcaagcatacataagatcagctactttatagaacaggtttt 446  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  4579079 tatcaggcgtacataagatcagctactttatagaacaggtttt 4579037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 4601842 - 4601789
Alignment:
Q  28 tgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||| |||||||||    
T  4601842 tgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 4392082 - 4392154
Alignment:
Q  5 aggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaaca 77  Q
    ||||||||||  ||||||| || | ||||| |||||||||||| ||| ||||||||||||| ||||| |||||    
T  4392082 aggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca 4392154  T

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Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 4490412 - 4490468
Alignment:
Q  6 ggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaagga 62  Q
    ||||||||||||||  || ||  ||||||||||||||||||| ||||||||||||||    
T  4490412 ggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaagga 4490468  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 4267228 - 4267295
Alignment:
Q  11 acacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 78  Q
    |||| |||||||| || | |||||||||||||||||| ||||| |||||||||||  |||| ||||||    
T  4267228 acacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4469883 - 4469813
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgct 71  Q
    ||||||||||| || |||||||||||   |||||||| ||||||||| ||||| |||||||| || |||||    
T  4469883 gtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgct 4469813  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4568126 - 4568072
Alignment:
Q  8 aggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaagga 62  Q
    ||||||| |||||||| |  | |||||||||||||||||| ||||||||||||||    
T  4568126 aggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 20863898 - 20863991
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgactt 97  Q
    ||||||||||| ||||| | |||  ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20863898 gaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgactt 20863991  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16686319 - 16686417
Alignment:
Q  1 gtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaatcaaacttaagtgactttt 99  Q
    ||||| || ||| |||||||||| || |||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| ||||||||||||    
T  16686319 gtggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttt 16686417  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 1674303 - 1674226
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  1674303 gaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 28000154 - 28000231
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    |||||| |||| ||||| || || |||||||||||||||||||| |||||||||||||| |||||| | |||||||||    
T  28000154 gaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 24103050 - 24103002
Alignment:
Q  30 ttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 78  Q
    |||||||||||||||||| ||||| |||||||||||  |||| ||||||    
T  24103050 ttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 4757 - 4815
Alignment:
Q  20 ctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 78  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||  |||| ||||||    
T  4757 ctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 1281192 - 1281114
Alignment:
Q  3 ggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaaaat 81  Q
    ||||||| |||| ||||| || || ||||||||||||||||| || ||||||||||||||  ||||||| |||||||||    
T  1281192 ggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 3086473 - 3086430
Alignment:
Q  28 tgttcatacatgaacttggagaaagtgattaaggaggtgttgct 71  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||    
T  3086473 tgttcatacatgaacttggacaaagttattaaggaggtcttgct 3086430  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 3774 - 3848
Alignment:
Q  4 gaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttgctcaaacaa 78  Q
    |||||| |||| ||||| || ||  |||||||||||||| |||| ||||| ||||||||||| ||||| ||||||    
T  3774 gaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

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