View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_13 (Length: 452)
Name: NF5492_low_13
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 37158669 - 37158387
Alignment:
| Q |
18 |
tgaatcaaagtaatgaattgggttagaatgactgctggtttagtagatgatatgcaacttactaactggaaaaatagttcactgaatcactggagatgta |
117 |
Q |
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| T |
37158669 |
tgaatcaaagtaatgaattgggttagaatgactgctggtttagtagatgatatgcaacttactaactggaaaaatagttcactgaatcactggagatgta |
37158570 |
T |
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| Q |
118 |
aaataaaacttatcttcgcaatgctttagtgatggtaaactacactgtcaaaatgttatagtttatgaaataaaaatctgatgtggtaatannnnnnnca |
217 |
Q |
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| T |
37158569 |
aaataaaacttatcttcgcaatgctttagtgatggtaaactacactgtcaaaatgttatagtttatgaaataaaaatctgatgtggtaatatttttttca |
37158470 |
T |
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| Q |
218 |
tttattgtgatttgaactgtgcttatactcatatcaagtgaggaaagtattatttttaaagataacaaattgaacttagattt |
300 |
Q |
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| T |
37158469 |
tttattgtgatttgaattgtgcttatactcatatcaagtgaggaaagtattatttttaaagataacaaattgaacttagattt |
37158387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 353 - 445
Target Start/End: Complemental strand, 37158334 - 37158242
Alignment:
| Q |
353 |
cagatatgtacgaaatcagctgtcttgctgtaacttggttcaaatcaagtccttcgtgagacttgggatcgtttgcttcatattcttcgacat |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
37158334 |
cagatatgtacgaaatcagctgtcttgctgtaacttggttcaaatcaagtccttcgtgagacttgggatcgtttgcttcataatcttggacat |
37158242 |
T |
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