View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_16 (Length: 442)
Name: NF5492_low_16
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 44953473 - 44953904
Alignment:
| Q |
1 |
aacactacaatgtcactttaaatgcaaaaaatttataacatggtcatttacaacataacataatcatgtcaaagtcataaaataattatcacagtatcat |
100 |
Q |
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| T |
44953473 |
aacactacaatgtcactttaaatgcaaaaaatttataacatggtcatttacaacataacatagtcatgtcaaagtcataaaataattatcacagtatcat |
44953572 |
T |
|
| Q |
101 |
aacaatgttataaaaaatttctcgtaacataacaaagtcattacaaatttatcacatcgaaacatagtcataacataaacagttaacatatattctatag |
200 |
Q |
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| T |
44953573 |
aacaatgttataaaaaatttctcgcaacataacaaagtcattacaaatttatcacatcgaaacatagtcataacataaacagttaacatatattctatag |
44953672 |
T |
|
| Q |
201 |
gacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttcaatttaagtactactacatattt |
300 |
Q |
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| T |
44953673 |
gacttgatttaagacatgtcggcattgagtccaatttgatatcattttctcccttttccttgcctttcttggggttcaatttaagtactactacatattt |
44953772 |
T |
|
| Q |
301 |
caatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtatacaaaaattgaagtataccgaagattgattgacatgagataaacat |
400 |
Q |
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| T |
44953773 |
caatttctaacaaattgttgatatatttcaaacaagttgaaatagattaagtatacaaaaattgaagtataccgaagattgattgacatgagataaacat |
44953872 |
T |
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| Q |
401 |
aaaatttgagattccatgccaaatgatgatgt |
432 |
Q |
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| T |
44953873 |
aaaatttgagattccatgccaaatgataatgt |
44953904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
| Q |
280 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata |
355 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44994845 |
tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata |
44994770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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