View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_17 (Length: 429)
Name: NF5492_low_17
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 284 - 421
Target Start/End: Complemental strand, 48956036 - 48955903
Alignment:
| Q |
284 |
ggaagcaaaccctaatatgtccgtatagatccacatttttgtttttcttccattaattaatggacacattcctacctttaccttttccttcagatctgat |
383 |
Q |
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| T |
48956036 |
ggaaccaaaccctaatatgtccgtatagatccacatttttgtttttcttccattaat----ggacacattcctacctttaccttttccttcagatttgat |
48955941 |
T |
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| Q |
384 |
tcaatccttaattatgtctccttttggttatattcttc |
421 |
Q |
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| T |
48955940 |
tcaatccttaattgtgtctccttttggttattttcttc |
48955903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 48956334 - 48956223
Alignment:
| Q |
1 |
ctccattttccttctttgctttgattcagtttcagagattgagtgatctggcaacgtgtcatcgccatgttttgcatgactgtgatacaaatcgacacag |
100 |
Q |
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| T |
48956334 |
ctccattttccttctttgctttgattctgtttcagagattgagtgatctggca-----tcatcgccatgttttgcatgactgtgatacaaatcgacacag |
48956240 |
T |
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| Q |
101 |
aacacaacaagacaact |
117 |
Q |
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| T |
48956239 |
aacacaacaagacaact |
48956223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 48956198 - 48956092
Alignment:
| Q |
136 |
agcagtctaatcacggcaccacacttaaatcaatgacatgaaaagagaaaa--------------agagagtaggcttttgttgaatttggacctggact |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
48956198 |
agcagtctaatcacggcaccacacttaaatcaatgacatgaaaagagaaaaggagagagagagagagagagtaggcttttgttgaatttggacctgcact |
48956099 |
T |
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| Q |
222 |
tgtgtga |
228 |
Q |
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||||||| |
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| T |
48956098 |
tgtgtga |
48956092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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