View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_18 (Length: 395)
Name: NF5492_low_18
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 45521105 - 45521475
Alignment:
| Q |
19 |
catgtctcatcaatgcccccactggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactcca |
118 |
Q |
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| T |
45521105 |
catgtctcatcaatgcccccaccggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactcca |
45521204 |
T |
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| Q |
119 |
acaaggtgaagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaat |
218 |
Q |
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| T |
45521205 |
acaaggtgaagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttgctgcttcttatctcggcgctgtagccactgcagccaat |
45521304 |
T |
|
| Q |
219 |
cctttcttcacggctgctgagattggaaagcaagcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttgt |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45521305 |
cctttcttcacggcttctgagattggaaagcaagcaaaatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttgt |
45521404 |
T |
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| Q |
319 |
tgaacaacaatgatcataaggttgtgttggtagactcttccatagatgataataacaatgatgatgtccat |
389 |
Q |
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| T |
45521405 |
tgaacaacaatgatcataaggttgtgttggtagactcttccatagatgataataacaatgatcatgtccat |
45521475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 317
Target Start/End: Original strand, 349864 - 350130
Alignment:
| Q |
51 |
tacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttccca |
150 |
Q |
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| T |
349864 |
tacacctactatgatgtccaactcaccgcgcaaaaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggttcttctcccta |
349963 |
T |
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| Q |
151 |
attcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttcttcacggctgctgagattggaaagca |
250 |
Q |
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||| ||| ||||| || ||| ||||||| |||||||||| || |||||| || |||||||||||||| |||||||| | |||||||||| || || |
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| T |
349964 |
attgcccggaatttgtgttcgcctttctcggtgcttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagctgagattgctaaaca |
350063 |
T |
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| Q |
251 |
agcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttg |
317 |
Q |
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| T |
350064 |
agcaaaagcttccaatactaagttgcttgtaacacaagcttgttactatgacaaagttaaggatttg |
350130 |
T |
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