View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_24 (Length: 367)
Name: NF5492_low_24
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_24 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 13392146 - 13391999
Alignment:
| Q |
19 |
atctgtgtcatgaacactttgtttaaataccaaacaaataggatctggttatacactcactcactagtttcaatttgcactacttttttcccctaacaaa |
118 |
Q |
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| T |
13392146 |
atctgtgtcatgaacactttgtttaaataccaaacaaataggatctggttatacactcact----agtttcaatttgcactacttttttcccctaacaaa |
13392051 |
T |
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| Q |
119 |
tatgattatctaacaaacttattaaaaagttagaatagtactactatgaaca |
170 |
Q |
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| T |
13392050 |
tatgattatctaacaaaattattaaaaagttagaatagtactactatgaaca |
13391999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 13391961 - 13391819
Alignment:
| Q |
171 |
tattttgagctagcaagagaggcttgtgttggaatttaacgtaaatttcttcaagaatattaacctacttagcttgttttggtggtgttgccttgagact |
270 |
Q |
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| T |
13391961 |
tatttagagctagcaagagaggcttgtgttggaatttaacgtaaattttttc---aaaattaacctacttaacttgttctggtaatgttatcttaagact |
13391865 |
T |
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| Q |
271 |
ttaaagtgtgttac------tttcgaagtctcaactttgattcttt |
310 |
Q |
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| T |
13391864 |
ttaaagtgcgttaccttcgatttcaaagtctcaactttgattcttt |
13391819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 29592 - 29506
Alignment:
| Q |
227 |
atattaacctacttagcttgttttggtggtgttgccttgagactttaaagtgtgttactttcgaagtctcaactttgattctttctg |
313 |
Q |
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| T |
29592 |
atattaatctacttaggttggtatggtggtgttcgcttgagactttggagtgtgtttctctcaaagtctcatgtttgattctctctg |
29506 |
T |
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