View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_26 (Length: 358)
Name: NF5492_low_26
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 34698469 - 34698134
Alignment:
| Q |
18 |
aactatgtattacaaaaatcataattggattataaatttatgtgttgaagtttatagcgtttcgatcatgtgtataaattttgatgcacatctagaatta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698469 |
aactatgtattacaaaaatcataattggattataaatttatgtgttgaagtttatagcgtttcgatcatgtgtataaattttgatgcacatctagaatta |
34698370 |
T |
|
| Q |
118 |
tttgatatatcgttgagataaatcaagactaatatctggtttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698369 |
tttgatatatcgttgagataaatcaagactaatatctggtttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgc |
34698270 |
T |
|
| Q |
218 |
tccggtgattgaggctgccatagacatagtcgagaaaagtcatggccagtttcatgttttggttatcattgcagatggtcaggtatatttaaaatgttac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698269 |
tccggtgattgaggctgccatagacatagtcgagaaaagtcatggccagtttcatgttttggttatcattgcagatggtcaggtatatttaaaatgttac |
34698170 |
T |
|
| Q |
318 |
cttagttaatttcttcaactgtttgcctatgcttct |
353 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| |
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| T |
34698169 |
cttagttaatttcttcaactgtttgcatatgattct |
34698134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 158 - 343
Target Start/End: Original strand, 34719964 - 34720147
Alignment:
| Q |
158 |
ttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgctccggtgattgaggctgccatagacatagtcgagaaaagt |
257 |
Q |
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||||||||| |||||||||||||| ||||| |||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
34719964 |
ttaagatacgtgactgaaggaatatttttggaatttgcgtgaaggaccgacttcttatgcaccggtgattgaggctgcaatagacatagtcgagaaaagt |
34720063 |
T |
|
| Q |
258 |
catggccagtttcatgttttggttatcattgcagatggtcaggtatatttaaaatgttaccttagttaatttcttcaactgtttgc |
343 |
Q |
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| T |
34720064 |
catggccaattccatgttttggttatcatcgcagatggtcaggtatatgt--aatgttacattaattaatttcttcaactgtttgc |
34720147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 26996120 - 26995796
Alignment:
| Q |
18 |
aactatgtattacaaaaatcataattggattataaatttatgtgttgaagtttatagcgtttcgatcatgtgtataaattttgatgcacatctagaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26996120 |
aactatgtattacaaaaatcataattggat-----------gtgttgaagtttatagcgtttcgatcatgtgtataaattttgatgcacatctagaatta |
26996032 |
T |
|
| Q |
118 |
tttgatatatcgttgagataaatcaagactaatatctggtttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgc |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26996031 |
tttgatatatctttgagataaatcaagactaatatctggtttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgc |
26995932 |
T |
|
| Q |
218 |
tccggtgattgaggctgccatagacatagtcgagaaaagtcatggccagtttcatgttttggttatcattgcagatggtcaggtatatttaaaatgttac |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26995931 |
tccagtgattgaggctgccatagacatagtcgagaaaagtcatggccaatttcatgttttggttatcattgcagacggtcaggtatatttaaaatgttac |
26995832 |
T |
|
| Q |
318 |
cttagttaatttcttcaactgtttgcctatgcttct |
353 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| |
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| T |
26995831 |
cttagttaatttcttcaactgtttgcatatgattct |
26995796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 157 - 351
Target Start/End: Original strand, 27064306 - 27064502
Alignment:
| Q |
157 |
tttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgctccggtgattgaggctgccatagacatagtcgagaaaag |
256 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
27064306 |
tttaagatacatgactgaaggaatatatttggattttctgtgaaggaccaacttcatatgcaccggtgattgaggctgcaatagacatagtcgagaaaag |
27064405 |
T |
|
| Q |
257 |
tcatggccagtttcatgttttggttatcattgcagatggtcaggt--atatttaaaatgttaccttagttaatttcttcaactgtttgcctatgctt |
351 |
Q |
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|
||||||||| || ||||| |||||||||||||||||||||||||| |||| |||||||||||| | |||| | ||||||||||||| ||||||| |
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| T |
27064406 |
tcatggccaattccatgtgttggttatcattgcagatggtcaggtacatatataaaatgttaccgcaattaaatgtttcaactgtttgcatatgctt |
27064502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 171 - 348
Target Start/End: Original strand, 27012863 - 27013041
Alignment:
| Q |
171 |
ctgaaggaatataattggattttgtgtgaaggaccaacttcttatgctccggtgattgaggctgccatagacatagtcgagaaaagtcatggccagtttc |
270 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
27012863 |
ctgaaggaa-atgattggattttgtgtgaaggaccaacttcatatgcaccggtgattgaggctgcaatagacatagtcgagaaaagtcatggccaattcc |
27012961 |
T |
|
| Q |
271 |
atgttttggttatcattgcagatggtcaggt--atatttaaaatgttaccttagttaatttcttcaactgtttgcctatg |
348 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||||||||| || ||||||||| | |||||| |||| |
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| T |
27012962 |
atgttttggttatcattgcagacggtcaggtacatatataaaatgttaccttgattcatttcttcagcagtttgcatatg |
27013041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 27033100 - 27032936
Alignment:
| Q |
158 |
ttaagatacacgactgaaggaatataattggattttgtgtgaaggaccaacttcttatgctccggtgattgaggctgccatagacatagtcgagaaaagt |
257 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| ||||||||| |
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| T |
27033100 |
ttaagatatatgactgaaggaatatttttggattttgtgtgaaggaccgacttcttatgcaccagtgatagaggctgcaatagacatagttgagaaaagt |
27033001 |
T |
|
| Q |
258 |
catggccagtttcatgttttggttatcattgcagatggtcag-gtatatttaaaatgttacctta |
321 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||| | ||||| ||| ||||||||||| |
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|
| T |
27033000 |
catggccaattccatgtcttggttatcattgcagatggtcggtatatatataacatgttacctta |
27032936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 27067865 - 27067925
Alignment:
| Q |
94 |
aattttgatgcacatctagaattatttgatatatcgttgagataaatcaagactaatatct |
154 |
Q |
| |
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|||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
27067865 |
aatttttatgcacgtctagatttatttgatatatcgttgagataaatcaaaactaatatct |
27067925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 27032454 - 27032352
Alignment:
| Q |
65 |
aagtttatagcgtttcgatcatgtgtata--aattttgatgcacatctagaattatttgatatatcgttgagataaatcaagactaatatctggtttaag |
162 |
Q |
| |
|
||||||||| ||||||||||| || |||| | ||| || ||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
27032454 |
aagtttatatcgtttcgatcacgtctatattattttctatacacgtctagatttatttgatatatcgttgagataaatcacgactaatatctcttttaag |
27032355 |
T |
|
| Q |
163 |
ata |
165 |
Q |
| |
|
||| |
|
|
| T |
27032354 |
ata |
27032352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 27064241 - 27064284
Alignment:
| Q |
109 |
ctagaattatttgatatatcgttgagataaatcaagactaatat |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
27064241 |
ctagaattatttgatatatcattgagatacatcaagactaatat |
27064284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 18542511 - 18542623
Alignment:
| Q |
190 |
ttttgtgtgaaggaccaacttcttatgctccggtgattgaggctgccatagacatagtcgagaaaagtcatggccagtttcatgttttggttatcattgc |
289 |
Q |
| |
|
|||||| || |||||||||||| ||||| ||||||||||||||||| || ||||| || ||||||| ||||||||| || ||||| |||||||| |||| |
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| T |
18542511 |
ttttgtttgtaggaccaacttcatatgcaccggtgattgaggctgcaatggacattgttgagaaaactcatggccaattccatgtgttggttattgttgc |
18542610 |
T |
|
| Q |
290 |
agatggtcaggta |
302 |
Q |
| |
|
|||||| |||||| |
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|
| T |
18542611 |
agatggccaggta |
18542623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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