View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_29 (Length: 345)
Name: NF5492_low_29
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_29 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 6514725 - 6515053
Alignment:
| Q |
1 |
gatataactccatttctaaactaatttaaatttaaattaaaatattataacataaaagatatgattgcatgacaattatgacttacaaagctcgagagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6514725 |
gatataactccatttctaaactaatttaaataaaaataaaaatattataacataaaagatatgattgcatgacaattatgacttacaaagctcgagagat |
6514824 |
T |
|
| Q |
101 |
attccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6514825 |
attccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaa |
6514924 |
T |
|
| Q |
201 |
ttgtccatgcctcgcatactctggtgccatatacccactacataacaatatggatagttcagctaaattaagaaaaatatttttacttatcttcaacttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6514925 |
ttgtccatgcctcgcatactctggtgccatatacccactacataacaatatggatagttcagctaaattaagaaaaatatttttacttatcttcaacttt |
6515024 |
T |
|
| Q |
301 |
ctactaacttgcatataagctaagctaat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
6515025 |
ctactaacttgcatataagctaagctaat |
6515053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 49 - 315
Target Start/End: Original strand, 6510374 - 6510639
Alignment:
| Q |
49 |
aacataaaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccactta |
148 |
Q |
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||||| |||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| |||||||| |
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| T |
6510374 |
aacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccactta |
6510473 |
T |
|
| Q |
149 |
caatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaa |
248 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||||||| ||||||||||| |||||||| ||||| |
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|
| T |
6510474 |
caatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaa |
6510573 |
T |
|
| Q |
249 |
tatggatagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcata |
315 |
Q |
| |
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||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6510574 |
tatgg-gagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcata |
6510639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6502702 - 6502950
Alignment:
| Q |
1 |
gatataactccatttctaaactaatttaaatttaaattaaaatattataacataaaagatatgattgcatgacaattatgacttacaaagctcgagagat |
100 |
Q |
| |
|
||||||| |||| |||||||||| |||||||| ||| |||| |||||| || ||||||||||| | | ||||||||||||||||||| ||||||| |
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| T |
6502702 |
gatataattccacttctaaactagtttaaattaaaacaaaaaacttataaaatgaaagatatgatgcaaaaaaaattatgacttacaaagcttgagagat |
6502801 |
T |
|
| Q |
101 |
attccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaa |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
6502802 |
attctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaa |
6502901 |
T |
|
| Q |
201 |
ttgtccatgcctcgcatactctggtgccatatacccactacataacaat |
249 |
Q |
| |
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|||||| ||| | ||||||| ||||||||||| || ||||| |||||| |
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| T |
6502902 |
ttgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
6502950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 254
Target Start/End: Original strand, 6497419 - 6497596
Alignment:
| Q |
77 |
tatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaact |
176 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||| |||| || ||| ||| ||||||| ||||||||| ||||||||||| |||||||| ||||| |
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| T |
6497419 |
tatgacttacaaagctcgatagatactcagtattctcctcatcgcgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaact |
6497518 |
T |
|
| Q |
177 |
aaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaatatgga |
254 |
Q |
| |
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|| ||||| || || |||||||||||| ||| | ||||| || ||||||||||| |||||||| |||||| |||| |
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| T |
6497519 |
gaatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatccactacaaaacaatttgga |
6497596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 47775427 - 47775317
Alignment:
| Q |
141 |
accacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccacta |
240 |
Q |
| |
|
|||||||| ||| |||||||| |||| || |||||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||||| ||||| |
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|
| T |
47775427 |
accacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccactg |
47775328 |
T |
|
| Q |
241 |
cataacaatat |
251 |
Q |
| |
|
|||| |||||| |
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|
| T |
47775327 |
cataccaatat |
47775317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 6525630 - 6525533
Alignment:
| Q |
142 |
ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccact |
239 |
Q |
| |
|
||||||| ||| ||||||| |||| |||||||||||| |||||||| || |||||||||||||||| | |||||||| ||||||||||| ||||| |
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| T |
6525630 |
ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact |
6525533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 47771329 - 47771240
Alignment:
| Q |
141 |
accacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccat |
230 |
Q |
| |
|
|||||||| ||| |||||||| |||| ||||| ||||||||||| |||||| ||||||||||||||| | |||||||| |||||||| |
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|
| T |
47771329 |
accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccat |
47771240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 49 - 315
Target Start/End: Original strand, 12054 - 12319
Alignment:
| Q |
49 |
aacataaaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccactta |
148 |
Q |
| |
|
||||| |||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| |||||||| |
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| T |
12054 |
aacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcaccactta |
12153 |
T |
|
| Q |
149 |
caatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacataacaa |
248 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||||||| ||||||||||| |||||||| ||||| |
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|
| T |
12154 |
caatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatccactacaaaacaa |
12253 |
T |
|
| Q |
249 |
tatggatagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcata |
315 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12254 |
tatgg-gagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcata |
12319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4380 - 4629
Alignment:
| Q |
1 |
gatataactccatttctaaactaatttaaatttaaattaaaatatta-taacataaaagatatgattgcatgacaattatgacttacaaagctcgagaga |
99 |
Q |
| |
|
||||||| |||| |||||||||| |||||||| ||| |||| ||| ||| || ||||||||||| | | ||||||||||||||||||| |||||| |
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|
| T |
4380 |
gatataattccacttctaaactagtttaaattaaaacaaaaaacttaataaaatgaaagatatgatgcaaaaaaaattatgacttacaaagcttgagaga |
4479 |
T |
|
| Q |
100 |
tattccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaa |
199 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4480 |
tattctgtattctccccatcacgaatgctactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaa |
4579 |
T |
|
| Q |
200 |
attgtccatgcctcgcatactctggtgccatatacccactacataacaat |
249 |
Q |
| |
|
||||||| ||| | ||||||| ||||||||||| || ||||| |||||| |
|
|
| T |
4580 |
attgtccgtgcattacatactcaggtgccatatatccgctacaaaacaat |
4629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 28854376 - 28854477
Alignment:
| Q |
142 |
ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactac |
241 |
Q |
| |
|
||||||| ||| |||||||||| || ||||||||| ||||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||| |||| |
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|
| T |
28854376 |
ccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctac |
28854475 |
T |
|
| Q |
242 |
at |
243 |
Q |
| |
|
|| |
|
|
| T |
28854476 |
at |
28854477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 28859701 - 28859864
Alignment:
| Q |
80 |
gacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttgtaccacttacaatttcaagaactaatataccaaaactaaa |
179 |
Q |
| |
|
|||||||||||||| | |||| |||||||| ||||| | ||| ||| ||||||| ||| ||||||| ||| |||||||| | | |||||||||||| |
|
|
| T |
28859701 |
gacttacaaagctcaatagatcctccgtattttccccgtgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaa |
28859800 |
T |
|
| Q |
180 |
gacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactacat |
243 |
Q |
| |
|
|||||||||||| |||||||| ||||||| | ||||||| ||||||||||| || |||||| |
|
|
| T |
28859801 |
gacatctgatttcactgaaaattctccatgcattacatactcaggtgccatatatccgctacat |
28859864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 27368316 - 27368414
Alignment:
| Q |
141 |
accacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccact |
239 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||||||||| |||||||||||||| ||||||| ||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
27368316 |
accacttataatctcaagaagtaatactccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgccatatatccact |
27368414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 28828675 - 28828776
Alignment:
| Q |
142 |
ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccactac |
241 |
Q |
| |
|
||||||| ||| |||||||||| || |||||||| ||||||||||||||| ||||||| ||||||| | ||||||| |||||||| || ||||||| |
|
|
| T |
28828675 |
ccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccactac |
28828774 |
T |
|
| Q |
242 |
at |
243 |
Q |
| |
|
|| |
|
|
| T |
28828775 |
at |
28828776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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