View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_3 (Length: 674)
Name: NF5492_low_3
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 266 - 664
Target Start/End: Original strand, 33554983 - 33555381
Alignment:
| Q |
266 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatccct |
365 |
Q |
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| T |
33554983 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatcctt |
33555082 |
T |
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| Q |
366 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
465 |
Q |
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| T |
33555083 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
33555182 |
T |
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| Q |
466 |
tgacctcttcccattccatcatttccatctgcaatttcacaaagtcatcgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
565 |
Q |
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| T |
33555183 |
tgatctcttcccattccatcatttccatctgcaatttcacaaagtcattgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
33555282 |
T |
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| Q |
566 |
gaggaactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
664 |
Q |
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| T |
33555283 |
gaggtactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
33555381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 33554724 - 33554915
Alignment:
| Q |
14 |
aatataacatatgttcttaagcatgtaagaactacatcccatgtaaccnnnnnnncgacatgaaagtatagtttcatacattgcatatataaatttcgac |
113 |
Q |
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| T |
33554724 |
aatataacatatgttcttaagcatgtaagatctacatcccatgtaaccaaaaaaacgacatgaaagtatagtttcatacattgcatatataaat---gac |
33554820 |
T |
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| Q |
114 |
tgaactcacacaaacaaatttcgatttgcaacatctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
208 |
Q |
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| T |
33554821 |
tgaactcacacaaacaaatttcgatttgcaacatctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
33554915 |
T |
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