View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_30 (Length: 342)
Name: NF5492_low_30
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1067028 - 1067363
Alignment:
| Q |
1 |
ctcaagcaacatagatacattatatagcagactccaaatcacaaagtgacaccaagctattaaaaccatcatgtctcgaca-----------------tc |
83 |
Q |
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| T |
1067028 |
ctcaagcaacatagatacattatatagcagactccaaatcacaaagtgacaccaaactattaaaaccatcatgtctcgacaatggttgctacaaaccatc |
1067127 |
T |
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| Q |
84 |
gccaaaacgaaacataacattgtttaataaagaacttcaatggagtaaatttccaaccactatacatctgaaatttcatgaaaaataaccagacaatgga |
183 |
Q |
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| T |
1067128 |
gccaaaacgaaacataacattgtttaataaagaacttcaatggaataaatttccaaccactatacatctgaaatttcatgaaaaataaccagataatgga |
1067227 |
T |
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| Q |
184 |
cagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaagacactattgctatcaaattgactcccataataatttg |
283 |
Q |
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| T |
1067228 |
cagtaacaaaactaaactcaatcactatgaaacactaatatagatacgaacatatcggacaagacactattgctatcaaattgactcccataataatttg |
1067327 |
T |
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| Q |
284 |
agaaaatgacatagttgcttgtgacctaatgtgtca |
319 |
Q |
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| T |
1067328 |
agaaaatgacatagttgcttgtgacccaatgtgtca |
1067363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 1067549 - 1067610
Alignment:
| Q |
129 |
taaatttccaaccactatacatctgaaatttcatgaaaaataaccagacaatggacagtaac |
190 |
Q |
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| T |
1067549 |
taaatttccaatcacggtacacctgaaatttcatgaaaaatagccagacaatggacagtaac |
1067610 |
T |
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