View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_31 (Length: 328)
Name: NF5492_low_31
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 23160198 - 23160500
Alignment:
| Q |
10 |
aagaaaattcaaaggctactcactcaagatgatgcttattgggaaacatagagcacaaacacattggtacaaatacggtgatagaaacacaaaattcttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23160198 |
aagaaaattcaaaggctactcactcaagatgatgcttattgg-aaacatagagcacaaacacattggtacaaatacggtgatagaaacacaaaattcttt |
23160296 |
T |
|
| Q |
110 |
catgcttctgcaacttctagaaaa-aaggtagatcaaattctatctcttgatgataatcatgggaataaaatcactgattctcaaggtatgtaagaagtc |
208 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23160297 |
catgcttatgcaactgctagaaaaaaaggtagatcaaattctatctcttgatgataatcatggtaataaaatcactgattttcaaggtatgtaagaagtc |
23160396 |
T |
|
| Q |
209 |
actagaaattattttgttgagcttttttagaagccatgcaatgtcacccaccccatcattgatgttgttcctctatgtatatccgcacatgacaatgata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23160397 |
gctagaaattattttgttgagcttttttagaagccatgtaatgtcacccaccccatcattgatgttgttcctctatgtatatccgcacatgacaatgatc |
23160496 |
T |
|
| Q |
309 |
ttct |
312 |
Q |
| |
|
|||| |
|
|
| T |
23160497 |
ttct |
23160500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 12529665 - 12529599
Alignment:
| Q |
93 |
gaaacacaaaattctttcatgcttctgcaacttctagaaaaaaggtagatcaaattctatctcttga |
159 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| ||||||| |||||| | |||||| |||| ||||| |
|
|
| T |
12529665 |
gaaacacgaaattctttcatgcatctgccactactagaaagaaggtaaaccaaattttatcacttga |
12529599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University