View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_34 (Length: 324)
Name: NF5492_low_34
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 3 - 312
Target Start/End: Complemental strand, 23159926 - 23159616
Alignment:
| Q |
3 |
acggtgcaagagaacaaggtaatggtcaaaaaccggagctgcaagattttctaacagtgcatttgaaaataaattaaaccaagcattaatagcaagggct |
102 |
Q |
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| T |
23159926 |
acggtgcaagagaacagggtaatggtcagaaaccggagctgcaagattttctaacagtgcattcggaaataaattaaaccaagcattaatagcaagggct |
23159827 |
T |
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| Q |
103 |
cgatctaacctttcctcaaccgcacgaggtgtccgcttttaaaccaggtgagcggataaccttatactgtaacatctgatagaccagagtcaagaatagc |
202 |
Q |
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| T |
23159826 |
cgatctaacctttcctcaaccgcacgaggtgtccgcttttaaatcaggtgagcggataaccttccattgtaacatctgatagaccagagtcaagaacagc |
23159727 |
T |
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| Q |
203 |
-ttgacgaaagtcgtttattaaccattgcggtcttgtagcacgtcctcttttttcactattatccattatatcattgaagtctccgaaaatacaccaagg |
301 |
Q |
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| T |
23159726 |
tttgacgaaagtcgtttattaaccattgcggtcttgtagcacgtcctcttttttcattattatccattatatcattgaagtctccgaaaatacaccaagg |
23159627 |
T |
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| Q |
302 |
acctgcatatt |
312 |
Q |
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||||||||||| |
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| T |
23159626 |
acctgcatatt |
23159616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 8865713 - 8865780
Alignment:
| Q |
67 |
gaaaataaattaaaccaagcattaatagcaagggctcgatctaacctttcctcaaccgcacgaggtgt |
134 |
Q |
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||||||||||| ||||||| |||| ||||||| || |||||||||||||| || || ||||| ||||| |
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| T |
8865713 |
gaaaataaattcaaccaagaattattagcaagagcacgatctaacctttcttccactgcacgcggtgt |
8865780 |
T |
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