View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_low_35 (Length: 315)

Name: NF5492_low_35
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_low_35
NF5492_low_35
[»] chr6 (16 HSPs)
chr6 (16-295)||(5345729-5346009)
chr6 (16-294)||(5242828-5243113)
chr6 (226-294)||(5177650-5177718)
chr6 (226-294)||(5689219-5689287)
chr6 (226-291)||(5283528-5283593)
chr6 (226-294)||(5279475-5279543)
chr6 (226-294)||(5353176-5353244)
chr6 (227-294)||(5101131-5101198)
chr6 (227-294)||(5136232-5136299)
chr6 (227-294)||(5351315-5351382)
chr6 (210-292)||(5126947-5127029)
chr6 (227-294)||(5156326-5156393)
chr6 (227-294)||(5426815-5426882)
chr6 (226-294)||(5438925-5438993)
chr6 (250-294)||(5448547-5448591)
chr6 (226-294)||(5098125-5098193)
[»] chr3 (4 HSPs)
chr3 (226-294)||(47985706-47985774)
chr3 (226-294)||(47994993-47995061)
chr3 (226-294)||(48004280-48004348)
chr3 (226-294)||(48013565-48013633)
[»] chr2 (1 HSPs)
chr2 (253-293)||(22583604-22583644)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 5345729 - 5346009
Alignment:
Q  16 atcaaaaggaaataagaaaccatcagttttattcttgtatggtatttaagccaggccggcagactgttttaagaatccaaacattttttcctactctatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345729 atcaaaaggaaataagaaaccatcagttttattcttgtatggtatttaagccaggccggcagactgttttaagaatccaaacattttttcctactctatg 5345828  T
Q  116 ttaacaatataaatataatcaattatcttatgacaaaa-aattatatctttaattagtaagcgacattatgcatatacttgtaaaataactttacgccta 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345829 ttaacaatataaatataatcaattatcttatgacaaaaaaattatatctttaattagtaagcgacattatgcatatacttgtaaaataactttacgccta 5345928  T
Q  215 ttttcacttcaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaact 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345929 ttttcacttcaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaact 5346009  T

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Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 5243113 - 5242828
Alignment:
Q  16 atcaaaaggaaataagaaaccatcagttttattcttgt---atggta-tttaagccaggccggcagactgttttaagaatccaaacattttttcctactc 111  Q
    ||||||||||||||||||||||||| ||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  5243113 atcaaaaggaaataagaaaccatcacttttattcttgttgtatggtactttaagccaggccggcagactgttttaagaatccaaatattttttccttctc 5243014  T
Q  112 -tatgttaacaatataaatataatcaattatcttatgac-aaaaaattatatctttaattagtaagcgacattatgcatatacttgtaaaataac-ttta 208  Q
     |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||| ||||    
T  5243013 atatgttaagaatataaaaataatcaattatcttatgacgaaaaaattatatctttaattattaagcgacattatgaatatactagtaaaaaaaccttta 5242914  T
Q  209 cgcctattttcacttcaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242913 cgcctattttcactttaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 5242828  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 5177650 - 5177718
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||||||||    
T  5177650 acagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaac 5177718  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 5689287 - 5689219
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||||||||    
T  5689287 acagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaac 5689219  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 5283593 - 5283528
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggtt 291  Q
    ||||||||||||||  ||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  5283593 acagaatatggatgtcaataggagtggtgattgtttgcttcctggtgatagttatccagattggtt 5283528  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 5279475 - 5279543
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||||||||||||| |||||||||||||| ||||  |||| |||| |||||||||||||||    
T  5279475 acagaatatggatgagaatgggtgtggtggttgtttgtttccaagtgatagttgtccagattggttaac 5279543  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 5353244 - 5353176
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||||||  ||||| |||||||||||||| || |||||||| ||||||||| ||||||||||    
T  5353244 acagaatatggatgttaatggaagtggtggttgtttcctccctggtgatagttatccaaattggttaac 5353176  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 5101198 - 5101131
Alignment:
Q  227 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||| ||||  ||| | |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  5101198 cagaatatagatgtcaatagtagtggtggttgtttgcttcctggtgatagttatccaaattggttaac 5101131  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 5136299 - 5136232
Alignment:
Q  227 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||| ||||  ||| | |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  5136299 cagaatatagatgtcaatagaagtggtggttgtttgcttcctggtgatagttatccaaattggttaac 5136232  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 5351315 - 5351382
Alignment:
Q  227 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||||   ||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  5351315 cagaatatggatctcaataggagtagtggttgtttgcttcctggtgatagttatccaaattggttaac 5351382  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 5127029 - 5126947
Alignment:
Q  210 gcctattttcacttcaacagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggtta 292  Q
    ||||||||| ||||  ||||||||||||||  | | || |||||||| |||||||||||||||| ||||||||| ||||||||    
T  5127029 gcctattttaacttttacagaatatggatgccagttggtgtggtggtagtttgcttcctggtgatagttatccatattggtta 5126947  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 5156393 - 5156326
Alignment:
Q  227 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||||  |||||||||||||||||||| || ||  |||| ||||||||| ||||||||||    
T  5156393 cagaatatggatggcaatgggagtggtggttgtttcctccccagtgatagttatccaaattggttaac 5156326  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 5426815 - 5426882
Alignment:
Q  227 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||||   ||| |||||||| ||| ||||||||||||||||||||||||| | ||||||||    
T  5426815 cagaatatggatctcaataggagtggtagttttttgcttcctggtgacagttatccaaagtggttaac 5426882  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 5438925 - 5438993
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||||||  |||||||||| |||| |||| || || ||||| ||||||||| ||||||||||    
T  5438925 acagaatatggatgtcaatgggagtgatggtcgttttctccccggtgatagttatccaaattggttaac 5438993  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 5448547 - 5448591
Alignment:
Q  250 tggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||    
T  5448547 tggtggttgtttccttcccggtgatagttatccagattggttaac 5448591  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 5098125 - 5098193
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    |||||||||||||   |||||||| |||| ||||||||||||   |||  |||||||||||||||||||    
T  5098125 acagaatatggatctcaatgggagcggtgattgtttgcttcccactgatggttatccagattggttaac 5098193  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 47985774 - 47985706
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||| ||  |||||||||| | |||||||||| |||||||| ||||||||| ||||||||||    
T  47985774 acagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaac 47985706  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 47995061 - 47994993
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||| ||  |||||||||| | |||||||||| |||||||| ||||||||| ||||||||||    
T  47995061 acagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaac 47994993  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 48004348 - 48004280
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||| ||  |||||||||| | |||||||||| |||||||| ||||||||| ||||||||||    
T  48004348 acagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaac 48004280  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 48013633 - 48013565
Alignment:
Q  226 acagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaac 294  Q
    ||||||||||| ||  |||||||||| | |||||||||| |||||||| ||||||||| ||||||||||    
T  48013633 acagaatatggctgttaatgggagtgattgttgtttgctccctggtgatagttatccaaattggttaac 48013565  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 22583644 - 22583604
Alignment:
Q  253 tggttgtttgcttcctggtgacagttatccagattggttaa 293  Q
    ||||||||||||||||||||| | ||||||| |||||||||    
T  22583644 tggttgtttgcttcctggtgataattatccaaattggttaa 22583604  T

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