View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_39 (Length: 300)
Name: NF5492_low_39
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 36886094 - 36886358
Alignment:
| Q |
17 |
agttttaatgttacacatattatttgatccttatttggaaaagttcagattgcattcatggtttgttttcacagatccaaaaaatttcaaggattcaagt |
116 |
Q |
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| T |
36886094 |
agttttaatgttgcacatattatttgatccttatttggaaaagttcagattgcattcatggtttgctttcacagatccataaaatttcaaggattcaagt |
36886193 |
T |
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| Q |
117 |
acctaaagttttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagat |
216 |
Q |
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| T |
36886194 |
atctaaagttttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagat |
36886293 |
T |
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| Q |
217 |
tatctaagccagtaattatggctacaatgggtccaattaagaaattgtgggttaaattcctgcaa |
281 |
Q |
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| T |
36886294 |
tatctaagccagtaaatacgtcaccaatgggtccaattaagaaattgtggcttaaattcctgcaa |
36886358 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 22556739 - 22556774
Alignment:
| Q |
191 |
gaagaagccatacatttctttgagattatctaagcc |
226 |
Q |
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| T |
22556739 |
gaagaagacatacatttctttgagattatctaagcc |
22556774 |
T |
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