View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_4 (Length: 660)
Name: NF5492_low_4
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 15 - 642
Target Start/End: Original strand, 24712808 - 24713444
Alignment:
| Q |
15 |
agcaaaggtgatgggaaaaggtggtttgatttagagaggtgnnnnnnn---gtggtgagcagcaagcgaagggggtctatggatttcgttttcagtgacc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||| | |
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| T |
24712808 |
agcaaaggtgatgggaaaaggtggtttgatttagagaggttttttttttttgtggtgagcagcgagcgaatgaggtctatggatttcgttttcagtgatc |
24712907 |
T |
|
| Q |
112 |
gttcgcgatggagtttgttttaggtggtaaagttggtttaggtggtgaagaggtggtttgatttaggtcttggttaggtgattggtgtataatgtctttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712908 |
gttcgcgatggagtttgttttaggtggtaaagttggtttaggtggtgaagaggtggtttgatttaggtcttggttaggtgattggtgtataatgtctttt |
24713007 |
T |
|
| Q |
212 |
atggtgnnnnnnnnnnngtgtttcgcctatatacaacgccttttgttttgtaatctcttataccagtctctgttcatcttgagcaggaccaagttttaaa |
311 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24713008 |
atggtgtttttttta--gtgtttcgcctatatacgacgccttttgttttgtaatctcttatactggtctctgttcatcttgagcaggaccaagttttaaa |
24713105 |
T |
|
| Q |
312 |
taaattttgccatttnnnnnnnnnnn--------caggttgcccagctccaattatgaagttttatctttataaaaagggaaagatgtataatcatgagc |
403 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24713106 |
taaattttgccatttaaaaaaaaaaaaaaaaaaacaggttgcccagctccaattatgaagttttatctttataaaaagggaaagatgtataatcatgagc |
24713205 |
T |
|
| Q |
404 |
ctaaagttctcaaagtagaaaaggatagatttatcattatagaaggaaagatctataaaatgaggcaattacttagcttcatcctaaaagccatgagctt |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24713206 |
ctaaagttctcaaagtagaaaaggatagatttatcattatagaaggaaagatctataaaatgaggcaattacttagcttcatcctaaaagccatgagctt |
24713305 |
T |
|
| Q |
504 |
agaatccttaggtgaaaaactgagtggtaagtcacacagattcactacaaacattagagaaatgaattagattacattttcattctagaaaacccacttt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24713306 |
agaatccttaggtgaaaaactgagtggtaagtcacacagattcactacaaacattagagaaatgaattagattacattttcattctagaaaacccacttt |
24713405 |
T |
|
| Q |
604 |
atttctgcggactgcctctgtctctttgatcggcatagt |
642 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
24713406 |
atttctgtggactgcctctgtctctttgatcggcatagt |
24713444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 382 - 509
Target Start/End: Original strand, 24637745 - 24637874
Alignment:
| Q |
382 |
ggaaagatgtataatcatgagcctaaagttctcaa-agtagaaaaggatagatttatcattatagaaggaaagatctataaa-atgaggcaattacttag |
479 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| |||||| | || || |||||| ||| |||||||||||| | |||| ||||| ||||||||| | |
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| T |
24637745 |
ggaaatatgtataaacatgagcctaaagttctcagcagtagagagagacagttttatctttacagaaggaaagatttttaaacatgagccaattacttgg |
24637844 |
T |
|
| Q |
480 |
cttcatcctaaaagccatgagcttagaatc |
509 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
24637845 |
cttcatcctaaagtccatgagcttagaatc |
24637874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 539
Target Start/End: Original strand, 24646732 - 24646839
Alignment:
| Q |
433 |
tttatcattatagaaggaaagatctataaa-atgaggcaattacttagcttcatcctaaaagccatgagcttagaatccttaggtgaaaaactgagtggt |
531 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||| ||| ||| |||||| | || |
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| T |
24646732 |
tttatctttacagaaggaaagatctttaaacatgagccaattacttggcttcatcctaaaaaccatgaacttagaatctatagaagaataactgattagt |
24646831 |
T |
|
| Q |
532 |
aagtcaca |
539 |
Q |
| |
|
|||||||| |
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|
| T |
24646832 |
aagtcaca |
24646839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 433 - 555
Target Start/End: Original strand, 24740722 - 24740845
Alignment:
| Q |
433 |
tttatcattatagaaggaaagatctataaa-atgaggcaattacttagcttcatcctaaaagccatgagcttagaatccttaggtgaaaaactgagtggt |
531 |
Q |
| |
|
|||||| ||||| |||||||||| ||| || ||||| ||| || || |||||||| || ||||||||||||||||||| ||| |||| ||| | ||| |
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|
| T |
24740722 |
tttatctttataaaaggaaagatatattaacatgagccaaatatttcgcttcatcttacaagccatgagcttagaatctatagatgaattactaattggc |
24740821 |
T |
|
| Q |
532 |
aagtcacacagattcactacaaac |
555 |
Q |
| |
|
|||| |||||||||||||| |||| |
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| T |
24740822 |
aagtgacacagattcactataaac |
24740845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 31424453 - 31424544
Alignment:
| Q |
65 |
ggtgagcagcaagcgaaggggg-tctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtg |
155 |
Q |
| |
|
|||||| ||| ||||||||||| | |||||||||||| |||| || | ||| ||||||||||| |||||||||| |||||||||| |||| |
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| T |
31424453 |
ggtgagtagcgagcgaaggggggtgtatggatttcgtgttcaatggctgtttatgatggagtttgatttaggtggtgaagttggttttggtg |
31424544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 24639752 - 24639814
Alignment:
| Q |
433 |
tttatcattatagaaggaaagatctataaa-atgaggcaattacttagcttcatcctaaaagc |
494 |
Q |
| |
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|||||| | |||||||||||||||||| || ||||| |||||| ||||||||||| ||||||| |
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|
| T |
24639752 |
tttatcttgatagaaggaaagatctatgaacatgagacaattatttagcttcatcgtaaaagc |
24639814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 17819667 - 17819575
Alignment:
| Q |
65 |
ggtgagcagcaagcgaagggggtctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtggt |
157 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||| |||||| |
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| T |
17819667 |
ggtgagcagcgagcgaagggggtttatggatttcgttttcagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggt |
17819575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 17819551 - 17819511
Alignment:
| Q |
175 |
taggtcttggttaggtgattggtgtataatgtcttttatgg |
215 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
17819551 |
taggttttggttaggtgattggtgtatgatgtcttttatgg |
17819511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 48567494 - 48567403
Alignment:
| Q |
65 |
ggtgagcagcaagcgaagggggtctatggatttcgttttcagtgaccg-ttcgcgatggagtttgttttaggtggtaaagttggtttaggtg |
155 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||||| ||| || |||| |||||| |||||||||| |||||||||| |||| |
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|
| T |
48567494 |
ggtgagcagcgagcgaaaggggtttatggatttcgttttcagttgccgtttaatgatgaagtttgatttaggtggtgaagttggttttggtg |
48567403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 48567372 - 48567334
Alignment:
| Q |
179 |
tcttggttaggtgattggtgtataatgtcttttatggtg |
217 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |
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| T |
48567372 |
tcttggttaggtgatgggtgtttaatgtcttttatggtg |
48567334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 11199835 - 11199758
Alignment:
| Q |
79 |
gaagggggtctatggatttcgttttcagtgaccgttcgcgatggagtttgttttaggtggtaaagttggtttaggtgg |
156 |
Q |
| |
|
||||| ||| ||||||||| ||||| |||| | |||||||||||||||| |||||| ||| |||||||||| ||||| |
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|
| T |
11199835 |
gaaggtggtttatggattttgtttttagtggcgtttcgcgatggagtttgatttaggcggtgaagttggttttggtgg |
11199758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 259
Target Start/End: Original strand, 44755922 - 44755952
Alignment:
| Q |
229 |
gtgtttcgcctatatacaacgccttttgttt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
44755922 |
gtgtttcgcctatatacaacgccttttgttt |
44755952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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