View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_41 (Length: 292)
Name: NF5492_low_41
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_41 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 40458710 - 40458428
Alignment:
| Q |
10 |
attatactactagtaaaagtatcgaaggattaaagaggagtcaacagcaaaccgcgtggattctctactaacaagataacatgtttgtgttcattagagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458710 |
attatactactagtaaaagtatcgaaggattaaagaggagtcaacagcaaaccgcgtggattctctactaacaagataacatgtttgtgttcattagagc |
40458611 |
T |
|
| Q |
110 |
ctttcggtaattgaaaaattaaagagaagccgtaatctaatcctttggtcatggccatgatgaatgaagaggttgatggcagcagctacaagtacgatgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458610 |
ctttcggtaattgaaaaattaaagagaagccgtaatctaatcctttggtcatggccatgatgaatgaagaggttgatggcagcagctacaagtacgatgt |
40458511 |
T |
|
| Q |
210 |
ttttctaagttttagaggggaagatacttactgtaccttcgcaggtaatctctatcatgctttacgcaacaagaaaatcaaga |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458510 |
ttttctaagttttagaggggaagatacttattgtaccttcgcaggtaatctctatcatgctttacgcaacaagaaaatcaaga |
40458428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 137 - 292
Target Start/End: Original strand, 40405178 - 40405334
Alignment:
| Q |
137 |
agccgtaatctaatcctttggtcatggccatgatgaatgaaga-ggttgatggcagcagctacaagtacgatgtttttctaagttttagaggggaagata |
235 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||||||| | |||||||||| ||||||||| |||||||||||||||| ||||||||||||| || | |
|
|
| T |
40405178 |
agccataatcttatcctttggtcatggccatgttgaatgaaaaaggttgatggctgcagctacatgtacgatgtttttctatgttttagaggggaggaca |
40405277 |
T |
|
| Q |
236 |
cttactgtaccttcgcaggtaatctctatcatgctttacgcaacaagaaaatcaaga |
292 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
40405278 |
cttactgtacctttacaggtaatctctatcatggtttgagcaacaagagaatcaaga |
40405334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 40407709 - 40407810
Alignment:
| Q |
191 |
gcagctacaagtacgatgtttttctaagttttagaggggaagatacttactgtaccttcgcaggtaatctctatcatgctttacgcaacaagaaaatcaa |
290 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| || || ||||||| ||||||| |||||| ||||||||||||| | || ||||||| |||||| |
|
|
| T |
40407709 |
gcagctacaagtacgatgtttttttatgttttagaaaggtggacacttactataccttcacaggtagtctctatcatgctctgcgtaacaagagaatcaa |
40407808 |
T |
|
| Q |
291 |
ga |
292 |
Q |
| |
|
|| |
|
|
| T |
40407809 |
ga |
40407810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University