View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_45 (Length: 288)
Name: NF5492_low_45
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_45 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40458125 - 40458409
Alignment:
| Q |
1 |
tgcgagggtagtctttaaacctttctcggaacttcaatatggctttgctactactaccatacttacatctctgaagctttacatccgaggaatgtacttc |
100 |
Q |
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| T |
40458125 |
tgcgagggtagtctttaaacctttctcggaacttcaatatggctttgctgctactaccatacttacatctctgaagctttacatccgaggaatgtacttc |
40458224 |
T |
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| Q |
101 |
gtaaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtgtggaggttgcatagttttttgag |
200 |
Q |
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| T |
40458225 |
gtaaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtgtggaggttgcatagttttttgag |
40458324 |
T |
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| Q |
201 |
agaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcgtcatcattttgaattt |
288 |
Q |
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| T |
40458325 |
agaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctca---tcatcattttgaattt |
40458409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 270
Target Start/End: Complemental strand, 40405549 - 40405377
Alignment:
| Q |
95 |
tacttcgtaaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtgtggaggttgcatagttt |
194 |
Q |
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| T |
40405549 |
tactttgtaaaagattggccaaacaagctggccgtacatcttcctacaccgaatgatgttctcaagttcatctaaacaacgtgtggaggatgcgaagttt |
40405450 |
T |
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| Q |
195 |
tttgagagaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcat |
270 |
Q |
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| T |
40405449 |
tcagagagaacaacaattgaaatccttgactcccgaattgccttgagaat---aggtgaatgttgaagttgctcat |
40405377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 40408000 - 40407864
Alignment:
| Q |
103 |
aaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtgtggaggttgcatagttttttgagag |
202 |
Q |
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| T |
40408000 |
aaaaaattggccaaacaagttgatttttcatcttcatacactcaaggatgttaacaagttcatctagacaacgcgtggaggatgcgaag--ttttcagag |
40407903 |
T |
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| Q |
203 |
aacgacgattgaaatccttgattcctgaattgccttgag |
241 |
Q |
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| T |
40407902 |
aacaacaatagaaatccttgcttccttaattgccttgag |
40407864 |
T |
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