View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_47 (Length: 276)
Name: NF5492_low_47
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 43184461 - 43184560
Alignment:
| Q |
163 |
ccaacctaaattgcaataattaatagcttaattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
262 |
Q |
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| T |
43184461 |
ccaacctaaattgcaataattaatagcttgattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
43184560 |
T |
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Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 43184317 - 43184424
Alignment:
| Q |
18 |
ctaacaattgtagatgatcacactcatcatggtttatgttacgaaatccaaagatgaaaacatacaaagaactgggggacataaaaactgaccattgaca |
117 |
Q |
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| T |
43184317 |
ctaacaactgtagatgatcacactcatcatggtttatgttacgaaatccaaagatgaaagcatacaaagaactgggggacataaaacctgaccattgaca |
43184416 |
T |
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| Q |
118 |
ctaacatg |
125 |
Q |
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| T |
43184417 |
ccaacatg |
43184424 |
T |
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