View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_48 (Length: 272)
Name: NF5492_low_48
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 36425965 - 36426214
Alignment:
| Q |
6 |
agaaacaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtt |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425965 |
agaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtt |
36426064 |
T |
|
| Q |
106 |
tgaatttggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36426065 |
tgaatttggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatg |
36426164 |
T |
|
| Q |
206 |
gcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36426165 |
gcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
36426214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 36397558 - 36397801
Alignment:
| Q |
12 |
aaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatt |
111 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||||||||||||||||||||| | ||||||||||| | ||| ||||||| ||||||||||||||| || |
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| T |
36397558 |
aaaggtgcatctgtctgtgggaatggcgaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagttaccatagatggtttgagtt |
36397657 |
T |
|
| Q |
112 |
tggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || || |||| ||||||||| ||||||||||||||||||||||| |
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| T |
36397658 |
tggatgaatgtgagaaagaatgcttgagaaactgctcctgtacttcctatgcagtagccgatgtgaggaatggtggtagtggatgtttggcatggcatgg |
36397757 |
T |
|
| Q |
212 |
ggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397758 |
ggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
36397801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 36404491 - 36404737
Alignment:
| Q |
12 |
aaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatt |
111 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||| ||||||||||| || |||||| |||| | ||| |||||||||||||||||||||| || |
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| T |
36404491 |
aaaggtgcatctatttgtgggaatggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttgccatagatggtttgagtt |
36404590 |
T |
|
| Q |
112 |
tggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgg |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
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| T |
36404591 |
tggaagaatgtgagaaagaatgcttgagaaattgctcttgtactgcctatgcagttgctgatgtgaggaatggtggtagtggatgtttggcatggcatgg |
36404690 |
T |
|
| Q |
212 |
ggatttaatggacattcaaaaact---tagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36404691 |
ggatttaatggacattcaaaaacttagtagtgatcaaggccaagatt |
36404737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 36411807 - 36412048
Alignment:
| Q |
14 |
aggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||| || ||||||||||| | ||| ||||||||||||||||||||||| |||| |
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| T |
36411807 |
aggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttg |
36411906 |
T |
|
| Q |
114 |
gatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgggg |
213 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||| |||||||||||| | ||||||||| |
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| T |
36411907 |
gaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagttgctgatgtgaggaatggtggtagtggatgtttgacgtggcatggga |
36412006 |
T |
|
| Q |
214 |
atttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |
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| T |
36412007 |
atttaatggacattcaaaaacttagtaatcagggccaagatt |
36412048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 36417138 - 36417379
Alignment:
| Q |
14 |
aggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| |||| || ||||||||||| | ||| ||||||||||||||||||||||| |||| |
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|
| T |
36417138 |
aggtgcatctgtttgtgggaatggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttg |
36417237 |
T |
|
| Q |
114 |
gatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgggg |
213 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||| |||||||||||| | ||||||||| |
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| T |
36417238 |
gaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagttgctgatgtgaggaatggtggtagtggatgtttgacgtggcatggga |
36417337 |
T |
|
| Q |
214 |
atttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
36417338 |
atttaatggacattcaaaaacttagtaatcagggccaagatt |
36417379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 36369200 - 36369443
Alignment:
| Q |
12 |
aaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatt |
111 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||||| |||||||||| ||| | |||||||| || || ||| ||| ||||| | || |||||||| || |
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|
| T |
36369200 |
aaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttgctaaaggtggtttgagtt |
36369299 |
T |
|
| Q |
112 |
tggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgg |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
36369300 |
tggaagaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgatgtgaggaatggtggaagtggttgtttggcatggcatgg |
36369399 |
T |
|
| Q |
212 |
ggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| |||| |
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| T |
36369400 |
ggatttaatggacgttcagaaacttagcgatcaaggccaggatt |
36369443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 36387788 - 36388022
Alignment:
| Q |
21 |
tctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttggatgaat |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||||||| | | |||||||| |||||| |||| |
|
|
| T |
36387788 |
tctgtttgtgagaatggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagttgctaaaagtggtttgagtttggaagaat |
36387887 |
T |
|
| Q |
121 |
gtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatggggatttaat |
220 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36387888 |
gtgagaaagaatgcttgcaaaactgttcttgtactgcctattcaattgctgatgtgaggaatggtggaagtggatgtttggcatggcatggggatttaat |
36387987 |
T |
|
| Q |
221 |
ggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
36387988 |
agacattcaaaaacttaatgatcaaggccaagatt |
36388022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 36373819 - 36374062
Alignment:
| Q |
12 |
aaaggtgcatctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatt |
111 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||||||||||||||||| |||| | ||||||||||| | ||| ||||||| | | || |||| ||| || |
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|
| T |
36373819 |
aaaggcgcatctatttgtcggaatggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaaaggtggtctgagtt |
36373918 |
T |
|
| Q |
112 |
tggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatgg |
211 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||| |||| |
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|
| T |
36373919 |
tggaagaatgcgaggaagaatgcttgagaaactgctcttgtacttcctatgcagttgctgatgtgagtaatggtggaagtggctgtttggcatggtatgg |
36374018 |
T |
|
| Q |
212 |
ggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36374019 |
ggatttaatggacattcaaaaacttagtgatcaaggccaagatt |
36374062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 36433835 - 36434071
Alignment:
| Q |
19 |
catctgtttgtggaaatggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttggatga |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| ||| | ||||||||||| || || | |||| ||||| || |||||||| |||||| || |
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|
| T |
36433835 |
catctgtttgtgggaatggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatgccaaaggtggtttgagtttggaaga |
36433934 |
T |
|
| Q |
119 |
atgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggtggaagtggatgtttggcatggcatggggattta |
218 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||| ||||||||||||| | | |||| ||||||||||| || ||||||||||||||||| |||||| |
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|
| T |
36433935 |
atgtgaaaaagaatgcttcagaaactgttcttgtacagcctatgcagttgataatgtgagcaatggtggaagcgggtgtttggcatggcatggtgattta |
36434034 |
T |
|
| Q |
219 |
atggacattcaaaaacttagtgatcaaggccaagatt |
255 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||| |
|
|
| T |
36434035 |
atggacattcaaaaagtaagcgatcaaggccaagatt |
36434071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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