View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_5 (Length: 628)
Name: NF5492_low_5
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 5 - 611
Target Start/End: Original strand, 2358679 - 2359292
Alignment:
| Q |
5 |
tttgaggtcaacaaaaatgccattcacgttgatatataataaagcagtagtactagcgtcagcattatgatcggcgccgcaaccaaaaacaata---ata |
101 |
Q |
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| T |
2358679 |
tttgaggtcaacaaaaatgccattcacgttgatatataataaagcagtagtactagcgtcagcattatgatcggcgccgcaaccaaaaacaatagtaata |
2358778 |
T |
|
| Q |
102 |
gataaataaatttaattaaactaatatcatgtcgtgtctctagataatatttatcattttcctttctttatat---gtatagattttgaataaacttaaa |
198 |
Q |
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| T |
2358779 |
gataaataaatttaattaaactaatatcatgtcgtgtctctagataatatttatcattttcctttctttatatatagtatagatt---aataaacttaaa |
2358875 |
T |
|
| Q |
199 |
agactatgcactatatnnnnnnn-ttatgaaatatagataagttctatagtatggtaaatttattgaagaataattacgtgaatggtggtgtagagtcca |
297 |
Q |
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| T |
2358876 |
agactatgcactatataaaaaaaattatgaaatatagataagttctatagtatggtaaatttattgaagaataattacgtgaatggtggtgtagagtcca |
2358975 |
T |
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| Q |
298 |
tggtagcaatgccggttgatgatggtgtacctgcatatactacgacgtttgattccataaataaatgaggttagtgagaggtaagaatgaagcatacatt |
397 |
Q |
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| T |
2358976 |
tggtagcaatgacggttgatgatggtgtatctgtatatactacgacgttcgagtccataaataaatgaggttagtgagaggtaagaatgaagcatacatt |
2359075 |
T |
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| Q |
398 |
gaggagtatgccatagcacttgcacaacttcaaacac---ataattttcgttaccaaggagatagtaatgggcttggatcaacccaaaatttcactgata |
494 |
Q |
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| T |
2359076 |
gaggagtatgacatagcacttacacaacttcaaacacataataattttcgttaccaaggagatagtaataggcttggatcaacccaaaatttcactgata |
2359175 |
T |
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| Q |
495 |
aagggatgaccccaagtcgattatttgtgatggcatgagtaaacgacttttaagcatagtcaaaggggtgttattttaagatactcattggcgatgagtg |
594 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2359176 |
aagggatgcccccaagtcgattatttgtgatggcatgagtaaacgacttttaagcatagtcaaaggggtgttattttaagatactcattggcgatgagtg |
2359275 |
T |
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| Q |
595 |
gttatagatattgtttt |
611 |
Q |
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| T |
2359276 |
gttatagatattgtttt |
2359292 |
T |
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