View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5492_low_50 (Length: 261)

Name: NF5492_low_50
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5492_low_50
NF5492_low_50
[»] chr3 (1 HSPs)
chr3 (18-251)||(8523046-8523279)
[»] chr5 (8 HSPs)
chr5 (27-250)||(42128832-42129055)
chr5 (27-229)||(42117711-42117913)
chr5 (41-229)||(34240487-34240675)
chr5 (52-253)||(34232720-34232924)
chr5 (41-253)||(42123461-42123673)
chr5 (39-120)||(41713612-41713693)
chr5 (75-229)||(41571961-41572115)
chr5 (75-229)||(41617600-41617754)
[»] chr2 (3 HSPs)
chr2 (14-253)||(12248396-12248635)
chr2 (14-253)||(11994294-11994533)
chr2 (41-253)||(32681831-32682043)
[»] chr4 (1 HSPs)
chr4 (41-251)||(11118106-11118316)
[»] chr6 (2 HSPs)
chr6 (41-253)||(25522949-25523161)
chr6 (41-253)||(24140793-24141004)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 8523046 - 8523279
Alignment:
Q  18 ctattccttatgtattcaaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatat 117  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  8523046 ctattcctcatgtattccaactcagtaacattcatcatggcttcaaactttttgaaataggattttggtagaggaccactaaagttattgtttgagatat 8523145  T
Q  118 caaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8523146 caaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaataatgcag 8523245  T
Q  218 tgtttgaagccaatgaggaaaattgtcatctatt 251  Q
    ||||| ||||||||||||||||||||| ||||||    
T  8523246 tgtttcaagccaatgaggaaaattgtcttctatt 8523279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 42128832 - 42129055
Alignment:
Q  27 atgtattcaaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatag 126  Q
    |||||||| || | |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  42128832 atgtattccaattgagtaacattcttcatggcttcaaactttttaaaataggcttttggtagcggaccgctaaagttattgcctgagatatcaaaaataa 42128931  T
Q  127 ttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaag 226  Q
    |||||  |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  42128932 ttaaacttggaaatggatgcttgatctttagattagcaatgataccatgcaacttgttgtcttgcaaaaccaacactttcaaatattgcagtgtttgaag 42129031  T
Q  227 ccaatgaggaaaattgtcatctat 250  Q
    ||||| |||||||||||| |||||    
T  42129032 ccaatcaggaaaattgtcttctat 42129055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 42117711 - 42117913
Alignment:
Q  27 atgtattcaaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatag 126  Q
    |||||||| || |||||||| ||| ||||||||||||| ||||| ||| | ||||||||||| ||||  ||||||||||| |||||||||| |||||||     
T  42117711 atgtattccaattcagtaactttcttcatggcttcaaatttttttaaaaatgcttttggtagcggacagctaaagttatttcctgagatataaaaaataa 42117810  T
Q  127 ttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaag 226  Q
    |||||  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||| |||||||| ||||||||| |||||||||||    
T  42117811 ttaaacttggaaatggatgcttgatctttggattaggaatgataccatgcaacttattgtcttgtaaaaccaacacttgcaaatattgtagtgtttgaag 42117910  T
Q  227 cca 229  Q
    |||    
T  42117911 cca 42117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 34240675 - 34240487
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||||| ||| ||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||  ||||   ||||||    
T  34240675 agtaactttcttcatggcttcaaaatattttaaataggcttttggtagcggaccagtaaagttattgcttgagatatcaaaaataactaaactaggaaat 34240576  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagcca 229  Q
    |||||| ||||||||  |||  |||||  |||||||||||||||||||||||||| || ||||||||| ||||| || |||||||||||    
T  34240575 ggatgcctgatctttaaattggcaatgtgaccatgcaacttattgtctcgcaaaaccagcactttcaagtattggagagtttgaagcca 34240487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 34232924 - 34232720
Alignment:
Q  52 tcatggcttcaaactttttgaaataggcttt---tggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaatggatgctt 148  Q
    ||||||||||| |||||||||||||| ||||   |||||| ||||||||||||||||| || |||||||||||||||  ||||   |||||||||| |||    
T  34232924 tcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattctt 34232825  T
Q  149 gatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaattgtcatct 248  Q
    |||||||  |||  |||||  ||||||||||||||| ||||| ||||  | ||||||||||| |||||  ||||||| ||| | |||||| ||||| |||    
T  34232824 gatctttaaattggcaatgtgaccatgcaacttattatctcgtaaaactagcactttcaaatcttgcaaagtttgaatccagtcaggaaatttgtcttct 34232725  T
Q  249 atttt 253  Q
    |||||    
T  34232724 atttt 34232720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 253
Target Start/End: Original strand, 42123461 - 42123673
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||| ||||| ||||||||||| | |||||  |||||||||||||||||  ||||| ||||||||| || ||||||||||||||  ||||   |||||||    
T  42123461 agtatcattcttcatggcttcataattttttgaataggcttttggtagaaaaccaccaaagttatttccagagatatcaaaaatgattaagcttggaaat 42123560  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaat 240  Q
     || |||  ||||||  |||  | |||  |||||| ||||||||||||||||||| ||  |||||||||| ||| |||||||||| ||||| ||||||||    
T  42123561 agacgctcaatctttaaattggcgatgggaccatgaaacttattgtctcgcaaaaccagtactttcaaatcttgaagtgtttgaaaccaatcaggaaaat 42123660  T
Q  241 tgtcatctatttt 253  Q
    |||| ||||||||    
T  42123661 tgtcttctatttt 42123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 41713693 - 41713612
Alignment:
Q  39 tcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaa 120  Q
    |||||||||||| |||||| || | | ||||| ||||||||||||||||| |||||||| |||| |||||| ||||||||||    
T  41713693 tcagtaacattcttcatggtttgataattttttaaataggcttttggtagcggaccactgaagtcattgcccgagatatcaa 41713612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 41572115 - 41571961
Alignment:
Q  75 taggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccat 174  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||| |||  |    ||||   |||||    
T  41572115 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttgatatttacaccggcaataggaccat 41572016  T
Q  175 gcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagcca 229  Q
     ||| ||||| |||||||||| ||  |||| |||||||||||  |||||||||||    
T  41572015 acaaattattctctcgcaaaaccagtacttccaaatattgcatagtttgaagcca 41571961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 41617754 - 41617600
Alignment:
Q  75 taggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccat 174  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||| |||  |    ||||   |||||    
T  41617754 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttgatatttacaccggcaataggaccat 41617655  T
Q  175 gcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagcca 229  Q
     ||| ||||| |||||||||| ||  |||| |||||||||||  |||||||||||    
T  41617654 acaaattattctctcgcaaaaccagtacttccaaatattgcatagtttgaagcca 41617600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 12248396 - 12248635
Alignment:
Q  14 tatactattccttatgtattcaaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgag 113  Q
    |||| ||||| | |||||| | || |||| ||||||| ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||||||    
T  12248396 tatattattcgtcatgtataccaattcagcaacattcttcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgcctgag 12248495  T
Q  114 atatcaaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatatt 213  Q
    ||||||||||||||||||  |||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||    
T  12248496 atatcaaaaatagttaaacttggaaatggatgctttgtatttagattaacaatgataccatgcaacttattgtctcgcagcagcaaaactttcaaatctt 12248595  T
Q  214 gcagtgtttgaagccaatgaggaaaattgtcatctatttt 253  Q
    |||||||||||||||||| |||||| | ||| ||||||||    
T  12248596 gcagtgtttgaagccaatcaggaaactcgtcttctatttt 12248635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 11994533 - 11994294
Alignment:
Q  14 tatactattccttatgtattcaaactcagtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgag 113  Q
    |||| ||||||| |||||| | || |||| ||||||| ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||| ||    
T  11994533 tatattattcctcatgtataccaattcagcaacattcttcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgccttag 11994434  T
Q  114 atatcaaaaatagttaaatctggaaatggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatatt 213  Q
    ||||||||||||||||||  |||||||||||||||  | ||| |||||||||||||| |||||||||||||||||||||  ||||| |||||||||| ||    
T  11994433 atatcaaaaatagttaaacttggaaatggatgctttgtatttagattaacaatgatatcatgcaacttattgtctcgcagcagcaaaactttcaaatctt 11994334  T
Q  214 gcagtgtttgaagccaatgaggaaaattgtcatctatttt 253  Q
    |||||||||||||||||| |||||| | ||| ||||||||    
T  11994333 gcagtgtttgaagccaatcaggaaactcgtcttctatttt 11994294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 253
Target Start/End: Complemental strand, 32682043 - 32681831
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||||||||| |||||||||||||    || ||||| ||||||| || |  |||||| ||||| || || ||||||||||||||  ||||    ||||||    
T  32682043 agtaacattcttcatggcttcaaaaaaatttaaataagcttttgatataaaaccactgaagttgtttccagagatatcaaaaatgattaagctaggaaat 32681944  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaat 240  Q
     |||| | | |||||  ||| ||||||  |||||||||||| ||||| ||||||| ||| |||||||||| ||||| ||| ||||||||||  || ||||    
T  32681943 agatgttcgttctttaaattgacaatgggaccatgcaacttgttgtcacgcaaaaccaatactttcaaatcttgcattgtatgaagccaatatgggaaat 32681844  T
Q  241 tgtcatctatttt 253  Q
    |||| ||||||||    
T  32681843 tgtcgtctatttt 32681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 11118106 - 11118316
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||||||||| |||| |||||| | ||||| ||||||||||||||||||  |||||||||| | ||||| ||||||||||||||  ||||   |||||||    
T  11118106 agtaacattcttcatagcttcatagttttttaaataggcttttggtagaaaaccactaaagctgttgcccgagatatcaaaaatgattaagcttggaaat 11118205  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaat 240  Q
     |||||| |||||||  |||  |||||  |||||||||||||||||||||||||| ||| |||||||||| | ||| |||||||||||||| |||||||     
T  11118206 agatgctcgatctttaaattttcaatgggaccatgcaacttattgtctcgcaaaaccaatactttcaaatctggcaatgtttgaagccaatcaggaaaac 11118305  T
Q  241 tgtcatctatt 251  Q
    |||| ||||||    
T  11118306 tgtcttctatt 11118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 253
Target Start/End: Complemental strand, 25523161 - 25522949
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||||||||| ||||||||||| | ||| | ||||||||||||||||||  |||||  || || || |||||||||||||||||  |||||  | |||||    
T  25523161 agtaacattcttcatggcttcataatttcttaaataggcttttggtagaaaaccacctaaattgttacctgagatatcaaaaatgattaaactttgaaat 25523062  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaat 240  Q
    | ||||||||| |||  ||| |||| |  |||||||||||| ||||||||||||| ||||||||||||||  |||| ||||||||||||||  |||||||    
T  25523061 gaatgcttgatttttaaattgacaagggaaccatgcaacttgttgtctcgcaaaaccaacactttcaaatcctgcattgtttgaagccaatccggaaaat 25522962  T
Q  241 tgtcatctatttt 253  Q
    |||| ||||||||    
T  25522961 tgtcttctatttt 25522949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 253
Target Start/End: Original strand, 24140793 - 24141004
Alignment:
Q  41 agtaacattcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcctgagatatcaaaaatagttaaatctggaaat 140  Q
    |||||||| | ||||||||||| | ||||| |||||||||||||| |||  |||||| ||||| || || ||||||||||||  | ||||   |||||||    
T  24140793 agtaacatccttcatggcttcataattttttaaataggcttttggcagaaaaccactgaagttgtttccagagatatcaaaatga-ttaaccttggaaat 24140891  T
Q  141 ggatgcttgatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcagtgtttgaagccaatgaggaaaat 240  Q
      |||||  ||||||  |||    |||  |||||| ||||||||||||||||||| ||| |||| |||||||||||||||| ||||||||| || |||||    
T  24140892 aaatgctacatctttaaattggtgatgtgaccatgtaacttattgtctcgcaaaaccaatacttccaaatattgcagtgttagaagccaatcagaaaaat 24140991  T
Q  241 tgtcatctatttt 253  Q
    |||| ||||||||    
T  24140992 tgtcttctatttt 24141004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University