View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_52 (Length: 259)
Name: NF5492_low_52
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 21658165 - 21658311
Alignment:
| Q |
1 |
cattatacgaacttcattgaatagttcattgaataattgatttgttaaatatggttaatgta--------atagggaatttatttcgttaactaattgtg |
92 |
Q |
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| T |
21658165 |
cattatacgaacttcattgaatatttcgttgaataattgatttgttaaatttggttaataaactgaataaataggaaatttattttgttaactaattgtg |
21658264 |
T |
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| Q |
93 |
atgaacatgagttatataatttgatttgtttggttcataaactaacc |
139 |
Q |
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| T |
21658265 |
aagaacatgagttatataatttgatttgtttagttcatgaactaacc |
21658311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 21645288 - 21645426
Alignment:
| Q |
9 |
gaacttcattgaatagttcattgaataattgatttgttaaatatggttaatgta--------atagggaatttatttcgttaactaattgtgatgaacat |
100 |
Q |
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| T |
21645288 |
gaacttcatccaatagttcgttgaataattgatttattaaatttggttaataaattgaataaatagggaatttattttgttaactaattgtgataaacat |
21645387 |
T |
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| Q |
101 |
gagttatataatttgatttgtttggttcataaactaacc |
139 |
Q |
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| T |
21645388 |
gagttatataatttgatttgtttagttcatgaactaacc |
21645426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 21207476 - 21207417
Alignment:
| Q |
80 |
ttaactaattgtgatgaacatgagttatataatttgatttgtttggttcataaactaacc |
139 |
Q |
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| T |
21207476 |
ttaactaattgtgatgaacatgagttatataatttgatttgtttggttcatgaactaacc |
21207417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21208112 - 21208055
Alignment:
| Q |
1 |
cattatacgaacttcattgaatagttcattgaataattgatttgttaaatatggttaa |
58 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
21208112 |
cattataggaacttcattgaatagttcattaaataattgatttgttaaatttggttaa |
21208055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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