View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_55 (Length: 253)
Name: NF5492_low_55
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 50129409 - 50129185
Alignment:
| Q |
10 |
aagaatatgattgatgaaaatgaaatcgctatgctaagcaacttttaaaggaaaaatttatgcctacagtccaaattcatgagagtcttgtgtcctcaat |
109 |
Q |
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| T |
50129409 |
aagaaaatgattgatgaaaatgaaatcgctatgctaagcaacttttaaaggacaaatttatgcctacagtccaaattcatgagagtcttgtgtcctcaat |
50129310 |
T |
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| Q |
110 |
ggtggtnnnnnnngacataaactagagttacaaatgataataatatcgatttcctagtaaaatagcatacaacatttcattccaagtatcaggagcacca |
209 |
Q |
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| T |
50129309 |
ggtggtaaaaaaagacataaactagagttacaaatgataataatatcgatttcctagtaaaacagcatacaacatttcattccaagtatcaggagcacca |
50129210 |
T |
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| Q |
210 |
gctagacaccaatgactgcagtcct |
234 |
Q |
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| T |
50129209 |
gctagacaccaatgactgcagtcct |
50129185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 31157551 - 31157610
Alignment:
| Q |
173 |
agcatacaacatttcattccaagtatcaggagcaccagctagacaccaatgactgcagtc |
232 |
Q |
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| T |
31157551 |
agcatacaacatttcattccaagtatcaggaacaccagcaagacaccagtgactacagtc |
31157610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 18358875 - 18358916
Alignment:
| Q |
188 |
attccaagtatcaggagcaccagctagacaccaatgactgca |
229 |
Q |
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| T |
18358875 |
attccaagtatcaggaacaccagctaggcaccaatggctgca |
18358916 |
T |
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