View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5492_low_6 (Length: 607)
Name: NF5492_low_6
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 235 - 597
Target Start/End: Original strand, 18198791 - 18199149
Alignment:
| Q |
235 |
tgacacatgcgtgcagtgtcaatgttgtgtctgtgtaaatggtatattaagcgagaaatattgattagattccaaaatgtttctgaagtagatcatagtc |
334 |
Q |
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| T |
18198791 |
tgacacatgcgtgcagtgtcaatgttgtgtct---taaatggtatattaagcgagaaatattgattagattccaaaatgtttctgaagtagatcatagtc |
18198887 |
T |
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| Q |
335 |
tagtacatattctgcaaaggtgctatctttcagaattagataactttgttgagtaaatatctttgatgcacatattatgtaaatgagagaggataaataa |
434 |
Q |
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| T |
18198888 |
tagtacatattctgcaaaggtgctatctttcagaattagataactttgttgagtaaatatctttgatgcacatattatgtaaatgagacaggataaataa |
18198987 |
T |
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| Q |
435 |
caaggtaaaaagaaaaaggaaatg---aaagagttttggactgaaatctaatgttttagaataaaataagaagcatgctacttctgttctgtttctcctc |
531 |
Q |
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| T |
18198988 |
caagg--aaaagacaaaggaaatgaaaaaagagttttggactgaaatataatgttttagaataaaataagaagcatgccacttctgttttgtttctactc |
18199085 |
T |
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| Q |
532 |
ttgttccagaagattatgagatttatttcagtttttactgtgttatgtctgtatccatgacctatg |
597 |
Q |
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| T |
18199086 |
tggttccagaagat--tgagatttatttcagtttttactgtgttatgtctgtatcgatgacctatg |
18199149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 18198551 - 18198776
Alignment:
| Q |
18 |
gtttgataccatcttggagcgtacaatctatctcaacacagtttgatgaaccaaataaacaaactttagggaaacattcgagagatggacgactttccaa |
117 |
Q |
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| T |
18198551 |
gtttgataccatcttggagcgtgcaatctatctcaacacagtttgatgaaccaaataaactaactttagggaaacattcgagagatggacgactttccaa |
18198650 |
T |
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| Q |
118 |
gggttttgcttctaaccctgcagctttatccaggtcacttttgttccatgagatgatttgatttggaataggtcacattgacaccttggtttgaaggcgt |
217 |
Q |
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| T |
18198651 |
gggttttgcttctaaccctgcagctttatcaaggtcacttttgttccatgagatgatttgatttggaataggtcacattgacaccttggtttgaaggcgt |
18198750 |
T |
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| Q |
218 |
gttccgtgtttgacaattgacacatg |
243 |
Q |
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| T |
18198751 |
gctcggtgtttgacaattgacacatg |
18198776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 367 - 488
Target Start/End: Original strand, 18189085 - 18189204
Alignment:
| Q |
367 |
gaattagataactttgttgagtaaatatctttgatgcacatattatgtaaatgagagaggataaataacaaggtaaaaagaaaaaggaaatgaaagagtt |
466 |
Q |
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| T |
18189085 |
gaatcagatgactttgttgagtaaatatctttgttgtacatattatgtaaatgagacaggataaataacaagatgaatagacaaaggaaagg--agattt |
18189182 |
T |
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| Q |
467 |
ttggactgaaatctaatgtttt |
488 |
Q |
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| T |
18189183 |
ttggactgaaatccaatgtttt |
18189204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 18231703 - 18231765
Alignment:
| Q |
378 |
ctttgttgagtaaatatctttgatgcacatattatgtaaatgagagaggataaataacaaggt |
440 |
Q |
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| T |
18231703 |
ctttgttgagtaaatatctttgatgtgcatattttttatatgagataggataaataacaaggt |
18231765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 18194319 - 18194369
Alignment:
| Q |
372 |
agataactttgttgagtaaatatctttgatgcacatattatgtaaatgaga |
422 |
Q |
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| T |
18194319 |
agatgactttgtttagtaaatatctttgttgtacatattctgtaaatgaga |
18194369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 18194068 - 18194121
Alignment:
| Q |
134 |
cctgcagctttatccaggtcacttttgttccatgagatgatttgatttggaata |
187 |
Q |
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| T |
18194068 |
cctgcagctttatcaaggtctcttgtgtttcatgagaggatttgattgggaata |
18194121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 18231459 - 18231516
Alignment:
| Q |
129 |
ctaaccctgcagctttatccaggtcacttttgttccatgagatgatttgatttggaat |
186 |
Q |
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| T |
18231459 |
ctaatcctgtagctttatcaaggtctcttgtgttccatgagaggatttgattgggaat |
18231516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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