View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5492_low_60 (Length: 251)
Name: NF5492_low_60
Description: NF5492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5492_low_60 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36425868 - 36425627
Alignment:
| Q |
1 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425868 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
36425769 |
T |
|
| Q |
101 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36425768 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatctt |
36425669 |
T |
|
| Q |
201 |
caacgaaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36425668 |
caacgaaagaaacgttacgaacggccatatctcgtttcatat |
36425627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36411702 - 36411461
Alignment:
| Q |
1 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
36411702 |
caaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcc |
36411603 |
T |
|
| Q |
101 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatctt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36411602 |
cacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatctt |
36411503 |
T |
|
| Q |
201 |
caacgaaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| | |||||| |
|
|
| T |
36411502 |
caacccaagaaacattacgaactgccatatctcctatcatat |
36411461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36417033 - 36416792
Alignment:
| Q |
1 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
36417033 |
caaagggtcacaattactgtttggtccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcc |
36416934 |
T |
|
| Q |
101 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatctt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36416933 |
cacatgaatgtttgaaagaaaccagattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatctt |
36416834 |
T |
|
| Q |
201 |
caacgaaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| | |||||| |
|
|
| T |
36416833 |
caacccaagaaacattacgaactgccatatctcctatcatat |
36416792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 36369092 - 36368856
Alignment:
| Q |
6 |
ggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgt |
105 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
36369092 |
ggtcacaattactgtttgatccacaggttccatagttatcacattggtctgttggttcagaccagtaccggttccattggctcttttgactgtcccacat |
36368993 |
T |
|
| Q |
106 |
gaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
36368992 |
gaatgtttgaaagaaaccagattgctgaaccgctattctagtaatgacagacttatcgaacatgttatacgtaagtgctacatagttgtcatcttcaacc |
36368893 |
T |
|
| Q |
206 |
aaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|||||||| ||| | || ||||||||||||||||| |
|
|
| T |
36368892 |
aaagaaacattaaaagtggtcatatctcgtttcatat |
36368856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 36387674 - 36387478
Alignment:
| Q |
2 |
aaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtccc |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| |||||| ||| | ||||||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
36387674 |
aaagggtcacaattaccatttgatccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtccc |
36387575 |
T |
|
| Q |
102 |
acgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatc |
198 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| ||||| |
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|
| T |
36387574 |
acctgaatgtttgaaggaaaccagattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
36387478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36373716 - 36373472
Alignment:
| Q |
1 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||| |||||| ||||||||| |||||||||||||||| ||| | ||||||| || |||||| ||| | |
|
|
| T |
36373716 |
caaagggtcacagttactgtttgatccacaggttccatagttatcacattggtttgttggttcagaccagaacctgttccattgacttttttgattgttc |
36373617 |
T |
|
| Q |
101 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagtt---gtcat |
197 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
36373616 |
caagtgaatatttgaaagaaaccagattgctgaacaactatcctagctatgacagacttatcaaacatgttatatgagattgctacatagttatcatcat |
36373517 |
T |
|
| Q |
198 |
cttcaacgaaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|||| || |||||||| || || ||||||||||||||||||| |
|
|
| T |
36373516 |
cttccacaaaagaaacattcaaaatcgccatatctcgtttcatat |
36373472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 36397455 - 36397245
Alignment:
| Q |
1 |
caaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| | ||||||| ||||||||| ||| | |
|
|
| T |
36397455 |
caaagggtcacaattactgtttgatccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgactcttttgattgttc |
36397356 |
T |
|
| Q |
101 |
cacgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatctt |
200 |
Q |
| |
|
|| |||||| |||||| |||||||||||||||||| |||| ||||| |||||| |||||| |||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
36397355 |
caagtgaatatttgaatgaaaccagattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctacatagttatcttctt |
36397256 |
T |
|
| Q |
201 |
caacgaaagaa |
211 |
Q |
| |
|
| || |||||| |
|
|
| T |
36397255 |
ccacaaaagaa |
36397245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 36404387 - 36404147
Alignment:
| Q |
2 |
aaagggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtccc |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || || ||||| ||||||| |||||| | | ||| |
|
|
| T |
36404387 |
aaagggtcacaattactgtttgatccacatgttccatagttatcacattggtctgttggttctgaatagaaccggttccattgattcttttcattccccc |
36404288 |
T |
|
| Q |
102 |
acgtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttc |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||| ||| ||||| |||||| |||||| ||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
36404287 |
acgtgaatatttgaaagaaaccagattgattaacaactttcctagcgatgacagacttatcaaacatgttatatgagattgctacggagttttcatcttc |
36404188 |
T |
|
| Q |
202 |
aacgaaagaaacgttacgaacggccatatctcgtttcatat |
242 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||| |
|
|
| T |
36404187 |
cacaaaagaaacgttaaaagtttccatatctcgtttcatat |
36404147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 36433722 - 36433509
Alignment:
| Q |
4 |
agggtcacaattactatttgatccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccac |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| || || || || ||||||| || |||| | |||||||| |
|
|
| T |
36433722 |
agggtcacaattactgtttgatccacatgttccatagttatcacattggtttgttggttgtgaatagaactggttccattgactttttttattgtcccac |
36433623 |
T |
|
| Q |
104 |
gtgaatgtttgaaagaaaccagattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaa |
203 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| | |||||||| |||| |||||| || ||||||||| | ||||||||||| ||||||||||| || |
|
|
| T |
36433622 |
attaatatttgaaagaaaccagattgctgaaccaccatcctagtaacgacagacttatcaaccatgttatacgtgagtgctacattgttgtcatcttgaa |
36433523 |
T |
|
| Q |
204 |
cgaaagaaacgtta |
217 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
36433522 |
caaaagaaatgtta |
36433509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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